Miyakogusa Predicted Gene

Lj0g3v0271729.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0271729.1 tr|Q6H525|Q6H525_ORYSJ Os02g0230300 protein
OS=Oryza sativa subsp. japonica GN=OSJNBb0035N08.30
PE=4,40.51,9e-19,seg,NULL,CUFF.17992.1
         (345 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G42840.1 | Symbols: PDF1 | protodermal factor 1 | chr2:178263...    86   5e-17

>AT2G42840.1 | Symbols: PDF1 | protodermal factor 1 |
           chr2:17826327-17827426 REVERSE LENGTH=306
          Length = 306

 Score = 85.5 bits (210), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 45/84 (53%), Positives = 54/84 (64%), Gaps = 4/84 (4%)

Query: 266 CNYWSTHPXXXXXXXXXXXXXXSAFGV----TNAPGFGAGISLPQALSNTRSDGLGALYR 321
           C+YW  HP               AFG     ++ PGF   ++L QALSNTRSD +GALYR
Sbjct: 192 CDYWRNHPTLIWGLLGWWGTVGGAFGTVSIPSSIPGFDPHMNLLQALSNTRSDPIGALYR 251

Query: 322 EGTASYLNSLVNSKFPFTTNQVRE 345
           EGTAS+LNS+VN KFPFTT QVR+
Sbjct: 252 EGTASWLNSMVNHKFPFTTPQVRD 275