Miyakogusa Predicted Gene

Lj0g3v0271449.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0271449.1 Non Chatacterized Hit- tr|G1KYF7|G1KYF7_ANOCA
Uncharacterized protein (Fragment) OS=Anolis
carolinen,34.53,1e-18,coiled-coil,NULL; seg,NULL,CUFF.17948.1
         (319 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G35340.1 | Symbols: MEE29 | helicase domain-containing protei...   294   5e-80
AT1G32490.1 | Symbols: EMB2733, ESP3 | RNA helicase family prote...   283   9e-77
AT1G32490.2 | Symbols: ESP3 | RNA helicase family protein | chr1...   258   5e-69
AT4G16680.1 | Symbols:  | P-loop containing nucleoside triphosph...    91   1e-18

>AT2G35340.1 | Symbols: MEE29 | helicase domain-containing protein |
           chr2:14872728-14879615 FORWARD LENGTH=1044
          Length = 1044

 Score =  294 bits (753), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 166/319 (52%), Positives = 214/319 (67%), Gaps = 9/319 (2%)

Query: 1   MLARRQKTYTILKDDENSDDDNVGGEDKSSITTASSSRKLDK--KRFRKKTEVQDDQDDE 58
           ML ++QKT+++L+ D + D++NV  +      +AS + K DK  KRFRKK+E  +D DDE
Sbjct: 87  MLLKKQKTFSLLEADHDEDENNVKKQ------SASKTGKSDKGQKRFRKKSEQLEDDDDE 140

Query: 59  VISRKERERQVKRRISPDEDNXXXXXXXRLKDQREKEELEQHLRERDAAGTRKLTESKLT 118
           V+  +E +R V+R++S DED+       RL+DQRE+EELEQHLRERD A TRKLTE K++
Sbjct: 141 VVIVREDKRNVRRKVSEDEDDGTESEEERLRDQREREELEQHLRERDTARTRKLTEPKMS 200

Query: 119 RKEEEEATRRSQAAEQDGIQSLRKVSXXXXXXXXXXXXXXXXXXXXXXXQYLFEGVKLTE 178
           +KE+EE  RR  A ++  I+SLRK S                        YLF   KLTE
Sbjct: 201 KKEQEEFVRRDSAVDKGDIESLRKFSWQEYMKKRKQKKVLELKDDIEDEPYLFGDEKLTE 260

Query: 179 AEQSELRYKKEIYELVKKRYEEADNVNEYRMPEAYDQDGVIDQEKRFSVAMQRYRDPNPE 238
            E  E RYK+EIYEL+KK  +E DNV EYRMP+AYDQ G +DQEKRF+V++QRYRD    
Sbjct: 261 REIREFRYKREIYELIKKSTQEEDNVGEYRMPDAYDQQGSVDQEKRFAVSVQRYRDMGSA 320

Query: 239 DKMNPFAEQEAWEDHQIGKGTLKYGSKNKRQVSDDYQFVFEDQIDFIKESVMDGDKFDYE 298
           +KMNPFAEQEAWEDHQI    LK+G+KNK +VSD+Y+FVFEDQIDFIK SV+ GD ++ E
Sbjct: 321 EKMNPFAEQEAWEDHQIENAALKFGAKNK-EVSDNYEFVFEDQIDFIKASVLAGDNYEDE 379

Query: 299 ETEDSLEKSRAKSALEALQ 317
                 + S  KSA   LQ
Sbjct: 380 MHAKPSQDSAGKSAFHMLQ 398


>AT1G32490.1 | Symbols: EMB2733, ESP3 | RNA helicase family protein
           | chr1:11742356-11749286 REVERSE LENGTH=1044
          Length = 1044

 Score =  283 bits (725), Expect = 9e-77,   Method: Compositional matrix adjust.
 Identities = 181/322 (56%), Positives = 225/322 (69%), Gaps = 15/322 (4%)

Query: 1   MLARRQKTYTILKDDENSDDDNVGGEDKSSITTASSSRKLDK--KRFRKKTEVQDDQDDE 58
           ML R+QKTY     D + D+D V  E KSS+   S SRK DK  KRFRKK+   D+ D E
Sbjct: 87  MLVRKQKTYA--LLDADDDEDEVVVEKKSSV---SESRKSDKGKKRFRKKSGQSDESDGE 141

Query: 59  VISRKERERQVKRRISPDEDNXXXXXXXRLKDQREKEELEQHLRERDAAGTRKLTESKLT 118
           V  R E  R V+R++S +ED+       R++DQ+E+EELEQHL++RD A TRKLTE  L+
Sbjct: 142 VAVR-EDSRHVRRKVS-EEDDGSESEEERVRDQKEREELEQHLKDRDTARTRKLTEQTLS 199

Query: 119 RKEEEEATRRSQAAEQDGIQSLRKVSXXXXXXXXXXXXXXXXXXXXXXXQYLFEGVKLTE 178
           +KE+EEA RR+ A E+D + SLRKVS                       QYLF G KLTE
Sbjct: 200 KKEKEEAVRRANALEKDDLYSLRKVSRQEYLKKREQKKLDELRDEIEDEQYLFGGEKLTE 259

Query: 179 AEQSELRYKKEIYELVKKRYEEADNVNEYRMPEAYDQDGVIDQEKRFSVAMQRYRDPNPE 238
            E  E RYKKE+Y+LVKKR ++ DNV EYR+P+AYDQ+G +DQEKRFSVA+QRYRD +  
Sbjct: 260 TELREFRYKKELYDLVKKRTQDEDNVEEYRIPDAYDQEGGVDQEKRFSVAVQRYRDLDST 319

Query: 239 DKMNPFAEQEAWEDHQIGKGTLKYGSKNKRQVSDDYQFVFEDQIDFIKESVMDGDKFDYE 298
           +KMNPFAEQEAWEDHQIGK TLK+G+KNK Q SDDYQFVFEDQI+FIKESVM G+  +YE
Sbjct: 320 EKMNPFAEQEAWEDHQIGKATLKFGAKNK-QASDDYQFVFEDQINFIKESVMAGE--NYE 376

Query: 299 ETEDSLEKSR---AKSALEALQ 317
           +  D+ +KS+    K+ALE LQ
Sbjct: 377 DAMDAKQKSQDLAEKTALEELQ 398


>AT1G32490.2 | Symbols: ESP3 | RNA helicase family protein |
           chr1:11742356-11749286 REVERSE LENGTH=1034
          Length = 1034

 Score =  258 bits (658), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 174/322 (54%), Positives = 215/322 (66%), Gaps = 25/322 (7%)

Query: 1   MLARRQKTYTILKDDENSDDDNVGGEDKSSITTASSSRKLDK--KRFRKKTEVQDDQDDE 58
           ML R+QKTY     D + D+D V  E KSS+   S SRK DK  KRFRKK+   D+ D E
Sbjct: 87  MLVRKQKTYA--LLDADDDEDEVVVEKKSSV---SESRKSDKGKKRFRKKSGQSDESDGE 141

Query: 59  VISRKERERQVKRRISPDEDNXXXXXXXRLKDQREKEELEQHLRERDAAGTRKLTESKLT 118
           V  R E  R V+R++S +ED+       R++DQ+E+EELEQHL++RD A TRKLTE  L+
Sbjct: 142 VAVR-EDSRHVRRKVS-EEDDGSESEEERVRDQKEREELEQHLKDRDTARTRKLTEQTLS 199

Query: 119 RKEEEEATRRSQAAEQDGIQSLRKVSXXXXXXXXXXXXXXXXXXXXXXXQYLFEGVKLTE 178
           +KE+EEA RR+ A E+D + SLRKVS                       QYLF G KLTE
Sbjct: 200 KKEKEEAVRRANALEKDDLYSLRKVSRQEYLKKREQKKLDELRDEIEDEQYLFGGEKLTE 259

Query: 179 AEQSELRYKKEIYELVKKRYEEADNVNEYRMPEAYDQDGVIDQEKRFSVAMQRYRDPNPE 238
            E  E RYKKE+Y+LVKKR ++ DNV E          G +DQEKRFSVA+QRYRD +  
Sbjct: 260 TELREFRYKKELYDLVKKRTQDEDNVEE----------GGVDQEKRFSVAVQRYRDLDST 309

Query: 239 DKMNPFAEQEAWEDHQIGKGTLKYGSKNKRQVSDDYQFVFEDQIDFIKESVMDGDKFDYE 298
           +KMNPFAEQEAWEDHQIGK TLK+G+KNK Q SDDYQFVFEDQI+FIKESVM G+  +YE
Sbjct: 310 EKMNPFAEQEAWEDHQIGKATLKFGAKNK-QASDDYQFVFEDQINFIKESVMAGE--NYE 366

Query: 299 ETEDSLEKSR---AKSALEALQ 317
           +  D+ +KS+    K+ALE LQ
Sbjct: 367 DAMDAKQKSQDLAEKTALEELQ 388


>AT4G16680.1 | Symbols:  | P-loop containing nucleoside triphosphate
           hydrolases superfamily protein | chr4:9388613-9390774
           REVERSE LENGTH=656
          Length = 656

 Score = 90.9 bits (224), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 45/93 (48%), Positives = 64/93 (68%), Gaps = 2/93 (2%)

Query: 196 KRYEEADNVNEYRMPEAYDQDGVIDQEKRFSVAMQRYRDPNPEDKMNPFAEQEAWEDHQI 255
           K+ EE  +   YR P+AYDQ+G IDQ+KRF VA +RY +     ++    EQEAWEDHQ 
Sbjct: 98  KKVEELRDERRYRFPDAYDQEGCIDQKKRFDVAKERYCERRRSGRV--VTEQEAWEDHQA 155

Query: 256 GKGTLKYGSKNKRQVSDDYQFVFEDQIDFIKES 288
            K  +++G+K+K+QV D Y+FVF+D   F++ES
Sbjct: 156 QKARVRFGAKDKKQVVDGYEFVFDDLTGFVEES 188