Miyakogusa Predicted Gene

Lj0g3v0271239.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0271239.1 Non Chatacterized Hit- tr|I3SHT2|I3SHT2_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2
SV=1,100,0.00000000000009, ,CUFF.17926.1
         (38 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G47860.1 | Symbols: CHL | chloroplastic lipocalin | chr3:1765...    62   9e-11

>AT3G47860.1 | Symbols: CHL | chloroplastic lipocalin |
           chr3:17656778-17658269 REVERSE LENGTH=353
          Length = 353

 Score = 61.6 bits (148), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 26/38 (68%), Positives = 33/38 (86%)

Query: 1   MMSMSGMQQALTNQFPDIGLKAPIEFNPFTSVFDTFKK 38
           MMSM GM+Q LTNQFPD+GL+  ++F+PFTSVF+T KK
Sbjct: 309 MMSMPGMEQTLTNQFPDLGLRKSVQFDPFTSVFETLKK 346