Miyakogusa Predicted Gene

Lj0g3v0271229.1
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0271229.1 Non Chatacterized Hit- tr|I1M6H3|I1M6H3_SOYBN
Uncharacterized protein (Fragment) OS=Glycine max
PE=3,55.56,0.000000000000004,Pectin lyase-like,Pectin lyase
fold/virulence factor; no description,NULL; no description,Pectin
lya,CUFF.17925.1
         (186 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G55590.1 | Symbols: QRT1 | Pectin lyase-like superfamily prot...    80   9e-16
AT5G53350.1 | Symbols: CLPX | CLP protease regulatory subunit X ...    59   1e-09
AT1G33360.1 | Symbols:  | ATP-dependent Clp protease | chr1:1209...    52   2e-07
AT5G49840.1 | Symbols:  | ATP-dependent Clp protease | chr5:2025...    49   3e-06

>AT5G55590.1 | Symbols: QRT1 | Pectin lyase-like superfamily protein
           | chr5:22519911-22521699 FORWARD LENGTH=380
          Length = 380

 Score = 79.7 bits (195), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 45/108 (41%), Positives = 66/108 (61%), Gaps = 23/108 (21%)

Query: 39  GVKLHFTQSAIMDLAEDGHDNRVRSYISWEDLKV-----DEQSLALKSNNDV-------- 85
           GV L    S  + +   G++N +++YISWEDL+V      E+S ++K N++         
Sbjct: 16  GVMLCLKSSCALQI---GNNNELKNYISWEDLRVVEDGRIERSFSIKENSNWVTTNANAN 72

Query: 86  -------RVIMVDQHGREHSKTVQGAVDMVPDHNTKRVKIYMFPGVYR 126
                  RVI+VD++G   S TVQGAVDMVPD N++RVKI++ PG+YR
Sbjct: 73  ANATNVRRVIVVDKNGGGDSVTVQGAVDMVPDSNSQRVKIFILPGIYR 120


>AT5G53350.1 | Symbols: CLPX | CLP protease regulatory subunit X |
           chr5:21644060-21647503 FORWARD LENGTH=579
          Length = 579

 Score = 59.3 bits (142), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 28/45 (62%), Positives = 35/45 (77%)

Query: 9   SDIASSLLETVLTEPKNALGNQYKKMFQINGVKLHFTQSAIMDLA 53
           S +  + L  VLTEPKNALG QYKKM+Q+N VKLHFT+SA+  +A
Sbjct: 431 SALTENQLMQVLTEPKNALGKQYKKMYQMNSVKLHFTESALRLIA 475


>AT1G33360.1 | Symbols:  | ATP-dependent Clp protease |
           chr1:12092111-12095789 FORWARD LENGTH=656
          Length = 656

 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 22/31 (70%), Positives = 26/31 (83%)

Query: 19  VLTEPKNALGNQYKKMFQINGVKLHFTQSAI 49
           VL EPKNALG QYKK+F +N VKLHFT+ A+
Sbjct: 526 VLVEPKNALGKQYKKLFSMNNVKLHFTEKAL 556


>AT5G49840.1 | Symbols:  | ATP-dependent Clp protease |
           chr5:20255243-20259035 FORWARD LENGTH=608
          Length = 608

 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 22/38 (57%), Positives = 29/38 (76%)

Query: 16  LETVLTEPKNALGNQYKKMFQINGVKLHFTQSAIMDLA 53
           L  VLTEPK+ALG QYKK+F++N V+L FT+ A   +A
Sbjct: 479 LVQVLTEPKSALGKQYKKLFRMNNVQLQFTEGATRLIA 516