Miyakogusa Predicted Gene

Lj0g3v0271089.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0271089.1 Non Chatacterized Hit- tr|I3S0J2|I3S0J2_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2
SV=1,97.92,0,DUF962,Protein of unknown function DUF962;
seg,NULL,CUFF.17915.1
         (192 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G18720.1 | Symbols:  | Protein of unknown function (DUF962) |...   228   2e-60
AT1G74440.1 | Symbols:  | Protein of unknown function (DUF962) |...   213   4e-56

>AT1G18720.1 | Symbols:  | Protein of unknown function (DUF962) |
           chr1:6458020-6459658 REVERSE LENGTH=206
          Length = 206

 Score =  228 bits (580), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 114/199 (57%), Positives = 135/199 (67%), Gaps = 8/199 (4%)

Query: 1   MALLDLEKHFAFYGAYHSNPINIAIHILFVWPILFTALIILYFTPPLFSP--------LI 52
           M L DLEKHFAFYGAYHSNPINI IHI+FVWPI F+ L++L+ + P+F P        L 
Sbjct: 5   MGLFDLEKHFAFYGAYHSNPINILIHIIFVWPIFFSVLLLLHSSTPIFDPSQLGFSQSLT 64

Query: 53  PYHPFVFNXXXXXXXXXXXXXXXXXXXXGSFTAFLTLLCWVASSFVANSLGFSLAWKVVL 112
                 FN                    G   A +   CWV SSF+A  LG SLA KV L
Sbjct: 65  LDGVLRFNVGFIFALIYALFYIGLDKKSGFVAALMCFSCWVGSSFLAVRLGSSLALKVGL 124

Query: 113 AAQIFCWTGQFLGHGLFEKRAPALLDNLAQAFLMAPFFVVLEILQSSFGYEPYPGFQTRV 172
           A+Q+ CWTGQF+GHG+FEKRAPALLDNL QAFLMAPFFV+LE+LQS FGYEPYPGFQ RV
Sbjct: 125 ASQLLCWTGQFVGHGVFEKRAPALLDNLLQAFLMAPFFVLLEVLQSVFGYEPYPGFQARV 184

Query: 173 KARIEADIKQWQETKQKKR 191
            A++E+DIK+++  KQKK 
Sbjct: 185 NAKVESDIKEYRAKKQKKN 203


>AT1G74440.1 | Symbols:  | Protein of unknown function (DUF962) |
           chr1:27979208-27980371 REVERSE LENGTH=208
          Length = 208

 Score =  213 bits (543), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 109/193 (56%), Positives = 127/193 (65%), Gaps = 8/193 (4%)

Query: 1   MALLDLEKHFAFYGAYHSNPINIAIHILFVWPILFTALIILYFTPPLF--SPLIPYHPFV 58
           + LLDLEKHFAFYGAYHSNPINI IH LFVWP +F  L+ LY TPP+   S L       
Sbjct: 5   IGLLDLEKHFAFYGAYHSNPINIIIHTLFVWPNVFATLLFLYSTPPILDHSQLGFLKSLT 64

Query: 59  FNXXXXXXXXXXXXXXXXX------XXXGSFTAFLTLLCWVASSFVANSLGFSLAWKVVL 112
           F+                          G   A L   CW+ SSF+A  LG SL  KV +
Sbjct: 65  FDGVLRLDIGFTLTVTYAVFYICLDKKSGVLAALLCFSCWIGSSFLAARLGHSLTLKVGV 124

Query: 113 AAQIFCWTGQFLGHGLFEKRAPALLDNLAQAFLMAPFFVVLEILQSSFGYEPYPGFQTRV 172
           A+Q+ CWTGQFLGHGLFEKRAPALLDNL QAFLM PFFV+LE+LQS FGYEPYPGF+ RV
Sbjct: 125 ASQLLCWTGQFLGHGLFEKRAPALLDNLLQAFLMGPFFVLLEVLQSVFGYEPYPGFKARV 184

Query: 173 KARIEADIKQWQE 185
            ++IE+ IK+W+E
Sbjct: 185 DSKIESGIKEWRE 197