Miyakogusa Predicted Gene

Lj0g3v0270709.1
Show Alignment: 

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0270709.1 tr|G7KVV0|G7KVV0_MEDTR F-box protein OS=Medicago
truncatula GN=MTR_7g050520 PE=4 SV=1,33.79,2e-18,RVT_3,NULL;
FBA_1,F-box associated domain, type 1; F_box_assoc_1: F-box protein
interaction domain,F,gene.g21015.t1.1
         (520 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G12560.2 | Symbols: CPR30 | F-box and associated interaction ...    67   4e-11
AT4G12560.1 | Symbols: CPR30 | F-box and associated interaction ...    67   4e-11
AT3G25270.1 | Symbols:  | Ribonuclease H-like superfamily protei...    66   7e-11
AT3G06240.1 | Symbols:  | F-box family protein | chr3:1887336-18...    50   3e-06
AT4G22390.1 | Symbols:  | F-box associated ubiquitination effect...    49   7e-06

>AT4G12560.2 | Symbols: CPR30 | F-box and associated interaction
           domains-containing protein | chr4:7441815-7443157
           FORWARD LENGTH=413
          Length = 413

 Score = 66.6 bits (161), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 57/190 (30%), Positives = 91/190 (47%), Gaps = 40/190 (21%)

Query: 8   SCSPGFLHLGIGYDCLSDTYKVV-----GVNPDVTM-------VNVYNMGDKCW------ 49
           S + G++  G+GYD +SD YKVV      ++ +  +       V V+++    W      
Sbjct: 132 SSTRGYVFYGLGYDSVSDDYKVVRMVQFKIDSEDELGCSFPYEVKVFSLKKNSWKRIESV 191

Query: 50  -STIQIFPHTPMHL---QGFEVYVSNTLNWLATLPYRIIYSVDDGTGLTVMSSDPYFIVS 105
            S+IQ+  +   HL   +G+ V   N+L+W+  LP R         GL   +     IV 
Sbjct: 192 ASSIQLLFYFYYHLLYRRGYGVLAGNSLHWV--LPRR--------PGLIAFN----LIVR 237

Query: 106 FDLGKEEWAQQLSLPYCPRRSKEFEDFVPILGVLGGCLCISQNNKETHSFVVWQMKEFGV 165
           FDL  EE+ + +  P          D    +GVL GCLC+  N  +++   VW MKE+ V
Sbjct: 238 FDLALEEF-EIVRFPEAVANGNV--DIQMDIGVLDGCLCLMCNYDQSY-VDVWMMKEYNV 293

Query: 166 HESWTQLFNI 175
            +SWT++F +
Sbjct: 294 RDSWTKVFTV 303


>AT4G12560.1 | Symbols: CPR30 | F-box and associated interaction
           domains-containing protein | chr4:7441815-7443157
           FORWARD LENGTH=413
          Length = 413

 Score = 66.6 bits (161), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 57/190 (30%), Positives = 91/190 (47%), Gaps = 40/190 (21%)

Query: 8   SCSPGFLHLGIGYDCLSDTYKVV-----GVNPDVTM-------VNVYNMGDKCW------ 49
           S + G++  G+GYD +SD YKVV      ++ +  +       V V+++    W      
Sbjct: 132 SSTRGYVFYGLGYDSVSDDYKVVRMVQFKIDSEDELGCSFPYEVKVFSLKKNSWKRIESV 191

Query: 50  -STIQIFPHTPMHL---QGFEVYVSNTLNWLATLPYRIIYSVDDGTGLTVMSSDPYFIVS 105
            S+IQ+  +   HL   +G+ V   N+L+W+  LP R         GL   +     IV 
Sbjct: 192 ASSIQLLFYFYYHLLYRRGYGVLAGNSLHWV--LPRR--------PGLIAFN----LIVR 237

Query: 106 FDLGKEEWAQQLSLPYCPRRSKEFEDFVPILGVLGGCLCISQNNKETHSFVVWQMKEFGV 165
           FDL  EE+ + +  P          D    +GVL GCLC+  N  +++   VW MKE+ V
Sbjct: 238 FDLALEEF-EIVRFPEAVANGNV--DIQMDIGVLDGCLCLMCNYDQSY-VDVWMMKEYNV 293

Query: 166 HESWTQLFNI 175
            +SWT++F +
Sbjct: 294 RDSWTKVFTV 303


>AT3G25270.1 | Symbols:  | Ribonuclease H-like superfamily protein |
           chr3:9203934-9204965 REVERSE LENGTH=343
          Length = 343

 Score = 65.9 bits (159), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 56/226 (24%), Positives = 94/226 (41%), Gaps = 15/226 (6%)

Query: 305 LVCAVLWNLWTWRNNAVFEPNPWTLPVVLRKIQNSVIEF------------QRWGRMNGN 352
           L   +LW LW  RN  VF+    +    L++ +N V E+            Q     +  
Sbjct: 119 LAIWILWRLWKSRNQLVFQQKSISWQNTLQRARNDVQEWEDTNTYVQSLNQQVHSSRHQQ 178

Query: 353 AGDAHTSFAREEVGSVELCTDGSIVPGS-NTLXXXXXXXXXXXXXXSGFAVASTGGDAFL 411
              A T + R     ++   DG+    + N                SG A+ ST  D+  
Sbjct: 179 PTMARTKWQRPPSTWIKYNYDGAFNHQTRNAKAGWLMRDENGVYMGSGQAIGSTTSDSLE 238

Query: 412 AEVRALYDGLNHVWNLGFRKVVCSSDCAELVAVVSGTQDVSQFWHRDMIQRIREILQRSW 471
           +E +AL   + H W+ G+RKV+   D  ++  +++   +   F   + I+  R   +R  
Sbjct: 239 SEFQALIIAMQHAWSQGYRKVIFEGDSKQVEELMNN--EKLNFGRFNWIREGRFWQKRFE 296

Query: 472 HVSVRYIPREENAVADALAKYAARVNCSWRVWRLPPAFVVSLLCQD 517
               +++PR  N  AD LAK+  + N S++     PAF+ S L  D
Sbjct: 297 EAVFKWVPRTNNQPADILAKHHLQPNQSFKFHYYVPAFITSTLYYD 342


>AT3G06240.1 | Symbols:  | F-box family protein |
           chr3:1887336-1888619 FORWARD LENGTH=427
          Length = 427

 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 49/206 (23%), Positives = 87/206 (42%), Gaps = 34/206 (16%)

Query: 13  FLHLGIGYDCLSDTYKVV---GVNPDVTMVNVYNMGDKCWSTIQIFPHTPMHLQGF---E 66
           F   G G+D L+D YK+V     + D+   +VY++    W  I    +   H  G     
Sbjct: 211 FQTYGFGFDGLTDDYKLVKLVATSEDILDASVYSLKADSWRRICNLNYE--HNDGSYTSG 268

Query: 67  VYVSNTLNWLATLPYRIIYSVDDGTGLTVMSSDPYFIVSFDLGKEEWAQQLSLPYCPRRS 126
           V+ +  ++W+                 T    +   +V+FD+  EE+ +          S
Sbjct: 269 VHFNGAIHWV----------------FTESRHNQRVVVAFDIQTEEFREMPVPDEAEDCS 312

Query: 127 KEFEDFVPILGVLGGCLCISQNNKETHSFVVWQMKEFGVHESWTQLFNIIVHERILHTPC 186
             F +FV  +G L G LC+  +  + H   +W M E+G  +SW++     +   +L+   
Sbjct: 313 HRFSNFV--VGSLNGRLCVVNSCYDVHD-DIWVMSEYGEAKSWSR-----IRINLLYRSM 364

Query: 187 FAMCMSENGDALLFAKSGVSQAVLYN 212
             +C ++N + +L    G    VLYN
Sbjct: 365 KPLCSTKNDEEVLLELDG--DLVLYN 388


>AT4G22390.1 | Symbols:  | F-box associated ubiquitination effector
           family protein | chr4:11813757-11815074 REVERSE
           LENGTH=402
          Length = 402

 Score = 49.3 bits (116), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 48/184 (26%), Positives = 86/184 (46%), Gaps = 42/184 (22%)

Query: 13  FLHLGIGYDCLSDTYKVVGVN-----------PDVTMVNVYNMGDKCWSTIQIFPHTPM- 60
           ++  G+GYD + D +KVV +            P    V V+++    W  + +     + 
Sbjct: 137 YVFYGLGYDSVGDDFKVVRIVQCKLKEGKKKFPCPVEVKVFSLKKNSWKRVCLMFEFQIL 196

Query: 61  ------HL---QGFEVYVSNTLNWLATLPYRIIYSVDDGTGLTVMSSDPYFIVSFDLGKE 111
                 HL   +G+ V V+N L+W+  LP R         G+   ++    I+ +DL  +
Sbjct: 197 WISYYYHLLPRRGYGVVVNNHLHWI--LPRR--------QGVIAFNA----IIKYDLASD 242

Query: 112 EWAQQLSLPYCPRRSKEFEDFVPILGVLGGCLCISQNNKETHSFVVWQMKEFGVHESWTQ 171
           +    LS P    +    ED + I GVL GC+C+   ++ +H   VW +KE+  ++SWT+
Sbjct: 243 DIGV-LSFP----QELYIEDNMDI-GVLDGCVCLMCYDEYSH-VDVWVLKEYEDYKSWTK 295

Query: 172 LFNI 175
           L+ +
Sbjct: 296 LYRV 299