Miyakogusa Predicted Gene
- Lj0g3v0270709.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0270709.1 tr|G7KVV0|G7KVV0_MEDTR F-box protein OS=Medicago
truncatula GN=MTR_7g050520 PE=4 SV=1,33.79,2e-18,RVT_3,NULL;
FBA_1,F-box associated domain, type 1; F_box_assoc_1: F-box protein
interaction domain,F,gene.g21015.t1.1
(520 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G12560.2 | Symbols: CPR30 | F-box and associated interaction ... 67 4e-11
AT4G12560.1 | Symbols: CPR30 | F-box and associated interaction ... 67 4e-11
AT3G25270.1 | Symbols: | Ribonuclease H-like superfamily protei... 66 7e-11
AT3G06240.1 | Symbols: | F-box family protein | chr3:1887336-18... 50 3e-06
AT4G22390.1 | Symbols: | F-box associated ubiquitination effect... 49 7e-06
>AT4G12560.2 | Symbols: CPR30 | F-box and associated interaction
domains-containing protein | chr4:7441815-7443157
FORWARD LENGTH=413
Length = 413
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 57/190 (30%), Positives = 91/190 (47%), Gaps = 40/190 (21%)
Query: 8 SCSPGFLHLGIGYDCLSDTYKVV-----GVNPDVTM-------VNVYNMGDKCW------ 49
S + G++ G+GYD +SD YKVV ++ + + V V+++ W
Sbjct: 132 SSTRGYVFYGLGYDSVSDDYKVVRMVQFKIDSEDELGCSFPYEVKVFSLKKNSWKRIESV 191
Query: 50 -STIQIFPHTPMHL---QGFEVYVSNTLNWLATLPYRIIYSVDDGTGLTVMSSDPYFIVS 105
S+IQ+ + HL +G+ V N+L+W+ LP R GL + IV
Sbjct: 192 ASSIQLLFYFYYHLLYRRGYGVLAGNSLHWV--LPRR--------PGLIAFN----LIVR 237
Query: 106 FDLGKEEWAQQLSLPYCPRRSKEFEDFVPILGVLGGCLCISQNNKETHSFVVWQMKEFGV 165
FDL EE+ + + P D +GVL GCLC+ N +++ VW MKE+ V
Sbjct: 238 FDLALEEF-EIVRFPEAVANGNV--DIQMDIGVLDGCLCLMCNYDQSY-VDVWMMKEYNV 293
Query: 166 HESWTQLFNI 175
+SWT++F +
Sbjct: 294 RDSWTKVFTV 303
>AT4G12560.1 | Symbols: CPR30 | F-box and associated interaction
domains-containing protein | chr4:7441815-7443157
FORWARD LENGTH=413
Length = 413
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 57/190 (30%), Positives = 91/190 (47%), Gaps = 40/190 (21%)
Query: 8 SCSPGFLHLGIGYDCLSDTYKVV-----GVNPDVTM-------VNVYNMGDKCW------ 49
S + G++ G+GYD +SD YKVV ++ + + V V+++ W
Sbjct: 132 SSTRGYVFYGLGYDSVSDDYKVVRMVQFKIDSEDELGCSFPYEVKVFSLKKNSWKRIESV 191
Query: 50 -STIQIFPHTPMHL---QGFEVYVSNTLNWLATLPYRIIYSVDDGTGLTVMSSDPYFIVS 105
S+IQ+ + HL +G+ V N+L+W+ LP R GL + IV
Sbjct: 192 ASSIQLLFYFYYHLLYRRGYGVLAGNSLHWV--LPRR--------PGLIAFN----LIVR 237
Query: 106 FDLGKEEWAQQLSLPYCPRRSKEFEDFVPILGVLGGCLCISQNNKETHSFVVWQMKEFGV 165
FDL EE+ + + P D +GVL GCLC+ N +++ VW MKE+ V
Sbjct: 238 FDLALEEF-EIVRFPEAVANGNV--DIQMDIGVLDGCLCLMCNYDQSY-VDVWMMKEYNV 293
Query: 166 HESWTQLFNI 175
+SWT++F +
Sbjct: 294 RDSWTKVFTV 303
>AT3G25270.1 | Symbols: | Ribonuclease H-like superfamily protein |
chr3:9203934-9204965 REVERSE LENGTH=343
Length = 343
Score = 65.9 bits (159), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 56/226 (24%), Positives = 94/226 (41%), Gaps = 15/226 (6%)
Query: 305 LVCAVLWNLWTWRNNAVFEPNPWTLPVVLRKIQNSVIEF------------QRWGRMNGN 352
L +LW LW RN VF+ + L++ +N V E+ Q +
Sbjct: 119 LAIWILWRLWKSRNQLVFQQKSISWQNTLQRARNDVQEWEDTNTYVQSLNQQVHSSRHQQ 178
Query: 353 AGDAHTSFAREEVGSVELCTDGSIVPGS-NTLXXXXXXXXXXXXXXSGFAVASTGGDAFL 411
A T + R ++ DG+ + N SG A+ ST D+
Sbjct: 179 PTMARTKWQRPPSTWIKYNYDGAFNHQTRNAKAGWLMRDENGVYMGSGQAIGSTTSDSLE 238
Query: 412 AEVRALYDGLNHVWNLGFRKVVCSSDCAELVAVVSGTQDVSQFWHRDMIQRIREILQRSW 471
+E +AL + H W+ G+RKV+ D ++ +++ + F + I+ R +R
Sbjct: 239 SEFQALIIAMQHAWSQGYRKVIFEGDSKQVEELMNN--EKLNFGRFNWIREGRFWQKRFE 296
Query: 472 HVSVRYIPREENAVADALAKYAARVNCSWRVWRLPPAFVVSLLCQD 517
+++PR N AD LAK+ + N S++ PAF+ S L D
Sbjct: 297 EAVFKWVPRTNNQPADILAKHHLQPNQSFKFHYYVPAFITSTLYYD 342
>AT3G06240.1 | Symbols: | F-box family protein |
chr3:1887336-1888619 FORWARD LENGTH=427
Length = 427
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/206 (23%), Positives = 87/206 (42%), Gaps = 34/206 (16%)
Query: 13 FLHLGIGYDCLSDTYKVV---GVNPDVTMVNVYNMGDKCWSTIQIFPHTPMHLQGF---E 66
F G G+D L+D YK+V + D+ +VY++ W I + H G
Sbjct: 211 FQTYGFGFDGLTDDYKLVKLVATSEDILDASVYSLKADSWRRICNLNYE--HNDGSYTSG 268
Query: 67 VYVSNTLNWLATLPYRIIYSVDDGTGLTVMSSDPYFIVSFDLGKEEWAQQLSLPYCPRRS 126
V+ + ++W+ T + +V+FD+ EE+ + S
Sbjct: 269 VHFNGAIHWV----------------FTESRHNQRVVVAFDIQTEEFREMPVPDEAEDCS 312
Query: 127 KEFEDFVPILGVLGGCLCISQNNKETHSFVVWQMKEFGVHESWTQLFNIIVHERILHTPC 186
F +FV +G L G LC+ + + H +W M E+G +SW++ + +L+
Sbjct: 313 HRFSNFV--VGSLNGRLCVVNSCYDVHD-DIWVMSEYGEAKSWSR-----IRINLLYRSM 364
Query: 187 FAMCMSENGDALLFAKSGVSQAVLYN 212
+C ++N + +L G VLYN
Sbjct: 365 KPLCSTKNDEEVLLELDG--DLVLYN 388
>AT4G22390.1 | Symbols: | F-box associated ubiquitination effector
family protein | chr4:11813757-11815074 REVERSE
LENGTH=402
Length = 402
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 86/184 (46%), Gaps = 42/184 (22%)
Query: 13 FLHLGIGYDCLSDTYKVVGVN-----------PDVTMVNVYNMGDKCWSTIQIFPHTPM- 60
++ G+GYD + D +KVV + P V V+++ W + + +
Sbjct: 137 YVFYGLGYDSVGDDFKVVRIVQCKLKEGKKKFPCPVEVKVFSLKKNSWKRVCLMFEFQIL 196
Query: 61 ------HL---QGFEVYVSNTLNWLATLPYRIIYSVDDGTGLTVMSSDPYFIVSFDLGKE 111
HL +G+ V V+N L+W+ LP R G+ ++ I+ +DL +
Sbjct: 197 WISYYYHLLPRRGYGVVVNNHLHWI--LPRR--------QGVIAFNA----IIKYDLASD 242
Query: 112 EWAQQLSLPYCPRRSKEFEDFVPILGVLGGCLCISQNNKETHSFVVWQMKEFGVHESWTQ 171
+ LS P + ED + I GVL GC+C+ ++ +H VW +KE+ ++SWT+
Sbjct: 243 DIGV-LSFP----QELYIEDNMDI-GVLDGCVCLMCYDEYSH-VDVWVLKEYEDYKSWTK 295
Query: 172 LFNI 175
L+ +
Sbjct: 296 LYRV 299