Miyakogusa Predicted Gene

Lj0g3v0270299.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0270299.2 tr|Q9AXJ3|Q9AXJ3_MANES RNA polymerase I, II and
III subunit RPB8 (Fragment) OS=Manihot esculenta
PE=,66.13,7e-19,DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT
RPABC3,NULL; DNA-DIRECTED RNA POLYMERASES I, II,,CUFF.17875.2
         (98 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G59600.1 | Symbols: NRPB8B, NRPD8B, NRPE8B | RNA polymerase R...   137   1e-33
AT1G54250.1 | Symbols: ATRPABC16.5, NRPB8A, NRPE8A | RNA polymer...   134   1e-32

>AT3G59600.1 | Symbols: NRPB8B, NRPD8B, NRPE8B | RNA polymerase
          Rpb8 | chr3:22016629-22017923 FORWARD LENGTH=146
          Length = 146

 Score =  137 bits (346), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 62/95 (65%), Positives = 80/95 (84%), Gaps = 1/95 (1%)

Query: 4  ILFDDIFRVEKLNPDDKKLFEKVTRIEARSERFDMFMHLDINSELYPLKVGQKFALLLVP 63
          I+F+DIF V+KL+PD KK F+KVTR+EARS   +MFMHLD+N+E+YPL VG KF L + P
Sbjct: 6  IMFEDIFVVDKLDPDGKK-FDKVTRVEARSHNLEMFMHLDVNTEVYPLAVGDKFTLAMAP 64

Query: 64 TLNPDGTPDTGYYVPGNRQSLADNFEYVMYGKLYK 98
          TLN DGTPDTGY+ PG +++LAD +EY+M+GKLYK
Sbjct: 65 TLNLDGTPDTGYFTPGAKKTLADKYEYIMHGKLYK 99


>AT1G54250.1 | Symbols: ATRPABC16.5, NRPB8A, NRPE8A | RNA
          polymerase Rpb8 | chr1:20255210-20256335 FORWARD
          LENGTH=146
          Length = 146

 Score =  134 bits (338), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 61/95 (64%), Positives = 79/95 (83%), Gaps = 1/95 (1%)

Query: 4  ILFDDIFRVEKLNPDDKKLFEKVTRIEARSERFDMFMHLDINSELYPLKVGQKFALLLVP 63
          ILF+DIF V++L+PD KK F+KVTR++A S   +MFMHLD+N+E+YPL VG KF L L P
Sbjct: 6  ILFEDIFVVDQLDPDGKK-FDKVTRVQATSHNLEMFMHLDVNTEVYPLAVGDKFTLALAP 64

Query: 64 TLNPDGTPDTGYYVPGNRQSLADNFEYVMYGKLYK 98
          TLN DGTPDTGY+ PG +++LAD +EY+M+GKLYK
Sbjct: 65 TLNLDGTPDTGYFTPGAKKTLADKYEYIMHGKLYK 99