Miyakogusa Predicted Gene

Lj0g3v0269999.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0269999.1 tr|D3D3T3|D3D3T3_9ACTO Probable allantoicase
OS=Frankia sp. EUN1f GN=alc PE=3 SV=1,37.27,9e-19,no
description,Oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase;
no description,Transthyret,CUFF.17845.1
         (333 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G58220.1 | Symbols: TTL | transthyretin-like protein | chr5:2...   367   e-102
AT5G58220.3 | Symbols: TTL | transthyretin-like protein | chr5:2...   340   7e-94
AT5G58220.2 | Symbols: TTL | transthyretin-like protein | chr5:2...   295   3e-80

>AT5G58220.1 | Symbols: TTL | transthyretin-like protein |
           chr5:23554546-23555861 REVERSE LENGTH=324
          Length = 324

 Score =  367 bits (943), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 196/333 (58%), Positives = 237/333 (71%), Gaps = 11/333 (3%)

Query: 1   MELGFDEKDYLSCCGSTIFAKEMASASPFSSFQHAISIARDIWFNSVDVNGWLQAFSAHP 60
           ME+G DE  +  CCGS+ FAK+M+++ P +S Q AI  ARDIWFN V+V  WL+AFSAHP
Sbjct: 3   MEIGEDE--WKVCCGSSEFAKQMSTSGPLTS-QEAIYTARDIWFNQVNVTDWLEAFSAHP 59

Query: 61  QIGQTHAPSHASETSAQWSKGEQXXXXXXXXXXXXQELSEWNARYMQKFGFVFLICASGR 120
           QIG T +PS  S+  A+ S  EQ            QEL+EWN  Y +KFGF+F+ICASGR
Sbjct: 60  QIGNTPSPSINSDF-ARRSVSEQSTAFATTSASALQELAEWNVLYKKKFGFIFIICASGR 118

Query: 121 STDEILAELKRRYTNRPIVEFEIAAQEQMKITELRLAKLFSSRENTSSTTDKYSTIVVKK 180
           +  E+L  LK RY NRPIVE EIAA EQMKITELR+AKLFS +    S TD  S+ V  K
Sbjct: 119 THAEMLHALKERYENRPIVELEIAAMEQMKITELRMAKLFSDKAKVISETDSSSSPVSTK 178

Query: 181 AEDRIGIIGGHVTAASENSTGKSLQTTARSRPPITTHVLDVSRGCPAAGMEVLLEVWRGS 240
            +DR+ IIGGH+  A+E    K      RSRPPITTHVLDVSRG PAAG+EV LEVW G+
Sbjct: 179 PQDRLRIIGGHLNVAAEAKAPK------RSRPPITTHVLDVSRGAPAAGVEVHLEVWSGT 232

Query: 241 QSRPTFGAAGGGSWVVLGSSTTDLDGRSGQLLSIVDDANSGVYRISFNTGKYNPSGFFPH 300
            + P+F   GGG W  +G+S TD DGRSG L+ +VD  N G YRISF+T KY+P  FFP+
Sbjct: 233 -TGPSFVHGGGGVWSSVGTSATDRDGRSGPLMDLVDALNPGTYRISFDTAKYSPGCFFPY 291

Query: 301 VSIVFEILESQKKQHFHVPLLLSPFSFSTYRGS 333
           VSIVF++ ESQK +HFHVPLLL+PFSFSTYRGS
Sbjct: 292 VSIVFQVTESQKWEHFHVPLLLAPFSFSTYRGS 324


>AT5G58220.3 | Symbols: TTL | transthyretin-like protein |
           chr5:23554546-23555861 REVERSE LENGTH=311
          Length = 311

 Score =  340 bits (872), Expect = 7e-94,   Method: Compositional matrix adjust.
 Identities = 186/333 (55%), Positives = 225/333 (67%), Gaps = 24/333 (7%)

Query: 1   MELGFDEKDYLSCCGSTIFAKEMASASPFSSFQHAISIARDIWFNSVDVNGWLQAFSAHP 60
           ME+G DE  +  CCGS+ FAK+M+++ P +S Q AI  ARDIWFN V+V  WL+AFSAHP
Sbjct: 3   MEIGEDE--WKVCCGSSEFAKQMSTSGPLTS-QEAIYTARDIWFNQVNVTDWLEAFSAHP 59

Query: 61  QIGQTHAPSHASETSAQWSKGEQXXXXXXXXXXXXQELSEWNARYMQKFGFVFLICASGR 120
           QIG T +PS  S+  A+ S  EQ            QEL+EWN  Y +KFGF+F+ICASGR
Sbjct: 60  QIGNTPSPSINSDF-ARRSVSEQSTAFATTSASALQELAEWNVLYKKKFGFIFIICASGR 118

Query: 121 STDEILAELKRRYTNRPIVEFEIAAQEQMKITELRLAKLFSSRENTSSTTDKYSTIVVKK 180
           +  E+L  LK RY NRPIVE EIAA EQMKITELR+AKLFS +    S TD  S+ V  K
Sbjct: 119 THAEMLHALKERYENRPIVELEIAAMEQMKITELRMAKLFSDKAKVISETDSSSSPVSTK 178

Query: 181 AEDRIGIIGGHVTAASENSTGKSLQTTARSRPPITTHVLDVSRGCPAAGMEVLLEVWRGS 240
            +                      +   RSRPPITTHVLDVSRG PAAG+EV LEVW G+
Sbjct: 179 PQ-------------------AEAKAPKRSRPPITTHVLDVSRGAPAAGVEVHLEVWSGT 219

Query: 241 QSRPTFGAAGGGSWVVLGSSTTDLDGRSGQLLSIVDDANSGVYRISFNTGKYNPSGFFPH 300
            + P+F   GGG W  +G+S TD DGRSG L+ +VD  N G YRISF+T KY+P  FFP+
Sbjct: 220 -TGPSFVHGGGGVWSSVGTSATDRDGRSGPLMDLVDALNPGTYRISFDTAKYSPGCFFPY 278

Query: 301 VSIVFEILESQKKQHFHVPLLLSPFSFSTYRGS 333
           VSIVF++ ESQK +HFHVPLLL+PFSFSTYRGS
Sbjct: 279 VSIVFQVTESQKWEHFHVPLLLAPFSFSTYRGS 311


>AT5G58220.2 | Symbols: TTL | transthyretin-like protein |
           chr5:23554546-23555861 REVERSE LENGTH=286
          Length = 286

 Score =  295 bits (755), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 169/333 (50%), Positives = 207/333 (62%), Gaps = 49/333 (14%)

Query: 1   MELGFDEKDYLSCCGSTIFAKEMASASPFSSFQHAISIARDIWFNSVDVNGWLQAFSAHP 60
           ME+G DE  +  CCGS+ FAK+M+++ P +S Q AI  ARDIWFN V+V  WL+AFSAHP
Sbjct: 3   MEIGEDE--WKVCCGSSEFAKQMSTSGPLTS-QEAIYTARDIWFNQVNVTDWLEAFSAHP 59

Query: 61  QIGQTHAPSHASETSAQWSKGEQXXXXXXXXXXXXQELSEWNARYMQKFGFVFLICASGR 120
           QIG T +PS  S+  A+ S  EQ            QEL+EWN  Y +KFGF+F+ICASGR
Sbjct: 60  QIGNTPSPSINSDF-ARRSVSEQSTAFATTSASALQELAEWNVLYKKKFGFIFIICASGR 118

Query: 121 STDEILAELKRRYTNRPIVEFEIAAQEQMKITELRLAKLFSSRENTSSTTDKYSTIVVKK 180
           +  E+L  LK RY NRPIVE EIAA EQMKITELR+AKLFS +    S TD  S+ V  K
Sbjct: 119 THAEMLHALKERYENRPIVELEIAAMEQMKITELRMAKLFSDKAKVISETDSSSSPVSTK 178

Query: 181 AEDRIGIIGGHVTAASENSTGKSLQTTARSRPPITTHVLDVSRGCPAAGMEVLLEVWRGS 240
            +                                            AAG+EV LEVW G+
Sbjct: 179 PQ--------------------------------------------AAGVEVHLEVWSGT 194

Query: 241 QSRPTFGAAGGGSWVVLGSSTTDLDGRSGQLLSIVDDANSGVYRISFNTGKYNPSGFFPH 300
            + P+F   GGG W  +G+S TD DGRSG L+ +VD  N G YRISF+T KY+P  FFP+
Sbjct: 195 -TGPSFVHGGGGVWSSVGTSATDRDGRSGPLMDLVDALNPGTYRISFDTAKYSPGCFFPY 253

Query: 301 VSIVFEILESQKKQHFHVPLLLSPFSFSTYRGS 333
           VSIVF++ ESQK +HFHVPLLL+PFSFSTYRGS
Sbjct: 254 VSIVFQVTESQKWEHFHVPLLLAPFSFSTYRGS 286