Miyakogusa Predicted Gene

Lj0g3v0269659.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0269659.1 Non Chatacterized Hit- tr|I1IFN5|I1IFN5_BRADI
Uncharacterized protein OS=Brachypodium distachyon
GN=,57.69,3e-19,PRENYLTRANSFERASES,NULL,CUFF.17815.1
         (137 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G23660.2 | Symbols: AtPPT1, PPT1 | polyprenyltransferase 1 | ...   107   2e-24
AT4G23660.1 | Symbols: AtPPT1, PPT1 | polyprenyltransferase 1 | ...   107   2e-24
AT4G23660.3 | Symbols: PPT1 | polyprenyltransferase 1 | chr4:123...   102   9e-23

>AT4G23660.2 | Symbols: AtPPT1, PPT1 | polyprenyltransferase 1 |
           chr4:12328086-12331359 REVERSE LENGTH=407
          Length = 407

 Score =  107 bits (267), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 53/78 (67%), Positives = 64/78 (82%), Gaps = 1/78 (1%)

Query: 19  VCRLMMF-SILGMQDKEDDLKVGVKSTALRFGDLTKEWITGFGFACLGNVALSGFNAELG 77
           VC  +++ +I   QDKEDD+KVGVKSTALRFGD TK W+TGFG A +G +ALSGF+A+LG
Sbjct: 294 VCWTLVYDTIYAHQDKEDDVKVGVKSTALRFGDNTKLWLTGFGTASIGFLALSGFSADLG 353

Query: 78  WPYYACLAAASGHLGWQV 95
           W YYA LAAASG LGWQ+
Sbjct: 354 WQYYASLAAASGQLGWQI 371


>AT4G23660.1 | Symbols: AtPPT1, PPT1 | polyprenyltransferase 1 |
           chr4:12328086-12331359 REVERSE LENGTH=407
          Length = 407

 Score =  107 bits (267), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 53/78 (67%), Positives = 64/78 (82%), Gaps = 1/78 (1%)

Query: 19  VCRLMMF-SILGMQDKEDDLKVGVKSTALRFGDLTKEWITGFGFACLGNVALSGFNAELG 77
           VC  +++ +I   QDKEDD+KVGVKSTALRFGD TK W+TGFG A +G +ALSGF+A+LG
Sbjct: 294 VCWTLVYDTIYAHQDKEDDVKVGVKSTALRFGDNTKLWLTGFGTASIGFLALSGFSADLG 353

Query: 78  WPYYACLAAASGHLGWQV 95
           W YYA LAAASG LGWQ+
Sbjct: 354 WQYYASLAAASGQLGWQI 371


>AT4G23660.3 | Symbols: PPT1 | polyprenyltransferase 1 |
           chr4:12328086-12331359 REVERSE LENGTH=429
          Length = 429

 Score =  102 bits (253), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 49/65 (75%), Positives = 56/65 (86%)

Query: 31  QDKEDDLKVGVKSTALRFGDLTKEWITGFGFACLGNVALSGFNAELGWPYYACLAAASGH 90
            DKEDD+KVGVKSTALRFGD TK W+TGFG A +G +ALSGF+A+LGW YYA LAAASG 
Sbjct: 329 DDKEDDVKVGVKSTALRFGDNTKLWLTGFGTASIGFLALSGFSADLGWQYYASLAAASGQ 388

Query: 91  LGWQV 95
           LGWQ+
Sbjct: 389 LGWQI 393