Miyakogusa Predicted Gene

Lj0g3v0269649.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0269649.1 Non Chatacterized Hit- tr|I1IUZ7|I1IUZ7_BRADI
Uncharacterized protein OS=Brachypodium distachyon
GN=,50.38,2e-19,coiled-coil,NULL; SUBFAMILY NOT NAMED,NULL; FAMILY NOT
NAMED,NULL; seg,NULL,CUFF.17814.1
         (133 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G08570.1 | Symbols:  | Phototropic-responsive NPH3 family pro...   133   4e-32
AT3G08660.1 | Symbols:  | Phototropic-responsive NPH3 family pro...   127   2e-30
AT5G48800.1 | Symbols:  | Phototropic-responsive NPH3 family pro...   100   5e-22
AT1G03010.1 | Symbols:  | Phototropic-responsive NPH3 family pro...    93   4e-20
AT2G47860.2 | Symbols:  | Phototropic-responsive NPH3 family pro...    86   8e-18
AT2G47860.3 | Symbols:  | Phototropic-responsive NPH3 family pro...    86   9e-18
AT2G47860.1 | Symbols:  | Phototropic-responsive NPH3 family pro...    86   1e-17

>AT3G08570.1 | Symbols:  | Phototropic-responsive NPH3 family
           protein | chr3:2602258-2604412 REVERSE LENGTH=617
          Length = 617

 Score =  133 bits (334), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 81/138 (58%), Positives = 97/138 (70%), Gaps = 6/138 (4%)

Query: 1   MVVQVLYVEQLRLKNAXXXXXXX--XXXXQRISSGVPSAAMSPRDNYASLRRENRELKLE 58
           MVV+VLY EQLR+KN              Q+ SS  PS A+SPRD YASLRRENRELKLE
Sbjct: 479 MVVRVLYSEQLRMKNVMSGESGEGLLLSSQKHSSENPSRAVSPRDTYASLRRENRELKLE 538

Query: 59  ISRLRVRLSELEKEQMFMKQGMIHKVGNGRTFLTSISKGIGRIAMF-SSQGRGKRQKSVR 117
           ISR+RVRL+ELEKEQ+ MKQGM+ K G+G T LTS+SKGIGRI++F      GK + + R
Sbjct: 539 ISRVRVRLTELEKEQILMKQGMMEKSGHGGTLLTSLSKGIGRISIFGGGPTEGKLRNANR 598

Query: 118 KSR---EGKTGRSRRYSV 132
           KS+   E KT RSR  S+
Sbjct: 599 KSKSRLERKTVRSRPESM 616


>AT3G08660.1 | Symbols:  | Phototropic-responsive NPH3 family
           protein | chr3:2631130-2633166 FORWARD LENGTH=582
          Length = 582

 Score =  127 bits (319), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 76/130 (58%), Positives = 87/130 (66%), Gaps = 3/130 (2%)

Query: 1   MVVQVLYVEQLRLKNAXXXXXXXXXXXQRISSGVPSAAMSPRDNYASLRRENRELKLEIS 60
           MVV+VLY EQLRLK A             + SGV S A+SPRD YA+LRRENRELKLEIS
Sbjct: 455 MVVRVLYTEQLRLKKALSGDSEEGSWV--LPSGVQSRAVSPRDTYAALRRENRELKLEIS 512

Query: 61  RLRVRLSELEKEQMFMKQGMIHKVG-NGRTFLTSISKGIGRIAMFSSQGRGKRQKSVRKS 119
           R+RVR+SELEKE   MK  M+ K G NG TFLTS+SKGIGRIA F  + R K  +  R  
Sbjct: 513 RMRVRVSELEKEHNLMKHEMMEKSGNNGGTFLTSLSKGIGRIATFGGETRQKVNRKSRSV 572

Query: 120 REGKTGRSRR 129
            E K+ RS R
Sbjct: 573 SERKSSRSGR 582


>AT5G48800.1 | Symbols:  | Phototropic-responsive NPH3 family
           protein | chr5:19786881-19789003 FORWARD LENGTH=614
          Length = 614

 Score = 99.8 bits (247), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 53/111 (47%), Positives = 75/111 (67%), Gaps = 10/111 (9%)

Query: 2   VVQVLYVEQLRLKNAXXXXXXXXXX--------XQRISSGVPSAAMSPRDNYASLRRENR 53
           +VQVLY EQL+L+++                    RI+SG  SA MSP+DNYASLRRENR
Sbjct: 474 IVQVLYFEQLKLRSSLCSSYSDEEPKPKQQQQQSWRINSGALSATMSPKDNYASLRRENR 533

Query: 54  ELKLEISRLRVRLSELEKEQMFMKQGMIHKVGNGRTFLTSISKGIGRIAMF 104
           ELKLE++RLR+RL++LEKE + MK+ M  +  + R F++S SK +G+++ F
Sbjct: 534 ELKLELARLRMRLNDLEKEHICMKRDM--QRSHSRKFMSSFSKKMGKLSFF 582


>AT1G03010.1 | Symbols:  | Phototropic-responsive NPH3 family
           protein | chr1:693480-696188 FORWARD LENGTH=634
          Length = 634

 Score = 93.2 bits (230), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 61/144 (42%), Positives = 82/144 (56%), Gaps = 12/144 (8%)

Query: 1   MVVQVLYVEQLRLKNAXXXX---------XXXXXXXQRISSGVPSAAMSPRDNYASLRRE 51
           M VQVLY EQ+RL+NA                    QR  SG  S A+SPRDNYAS+RRE
Sbjct: 492 MAVQVLYFEQIRLRNAMSSSIGPTQFLFNSNCHQFPQRSGSGAGSGAISPRDNYASVRRE 551

Query: 52  NRELKLEISRLRVRLSELEKEQMFMKQGMIHKVGNGRTFLTSISKGIGRIAMFSSQGRGK 111
           NRELKLE++R+R+RL++LEK+ + +KQ ++ K   G     S +K I ++    S    K
Sbjct: 552 NRELKLEVARMRMRLTDLEKDHISIKQELV-KSNPGTKLFKSFAKKISKLNSLFSFSSLK 610

Query: 112 RQKSVRKSREGK--TGRSRRYSVS 133
              S + S E +    R RR+SVS
Sbjct: 611 PSLSGKASSESRFLFQRKRRHSVS 634


>AT2G47860.2 | Symbols:  | Phototropic-responsive NPH3 family
           protein | chr2:19600465-19602088 FORWARD LENGTH=517
          Length = 517

 Score = 85.5 bits (210), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 55/142 (38%), Positives = 81/142 (57%), Gaps = 12/142 (8%)

Query: 1   MVVQVLYVEQLRLKNAXXXXXXXXXXXQ--------RISSGVPSAAMSPRDNYASLRREN 52
           + VQVL+ EQ RLKNA           Q        R  SG+ S A+SPRDNYAS+RREN
Sbjct: 365 IAVQVLFYEQTRLKNAMTSGGGTGGSNQSQFFLFPNRSGSGMASGAISPRDNYASVRREN 424

Query: 53  RELKLEISRLRVRLSELEKEQMFMKQGMIHKVGNGRTF--LTSISKGIGRIAMFSSQGRG 110
           REL+LE++R+R+RL++LEK+ + MK+  +      R +  L  +S+G+ ++     + R 
Sbjct: 425 RELRLEVARMRMRLTDLEKDHVSMKRDFVKPQSRRRRYGMLRKLSRGLNKLNAIVLRFRS 484

Query: 111 KRQ--KSVRKSREGKTGRSRRY 130
            +    S +K  E KT   RR+
Sbjct: 485 SQSVASSGKKHTEEKTNSERRF 506


>AT2G47860.3 | Symbols:  | Phototropic-responsive NPH3 family
           protein | chr2:19599979-19602088 FORWARD LENGTH=658
          Length = 658

 Score = 85.5 bits (210), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 55/142 (38%), Positives = 81/142 (57%), Gaps = 12/142 (8%)

Query: 1   MVVQVLYVEQLRLKNAXXXXXXXXXXXQ--------RISSGVPSAAMSPRDNYASLRREN 52
           + VQVL+ EQ RLKNA           Q        R  SG+ S A+SPRDNYAS+RREN
Sbjct: 506 IAVQVLFYEQTRLKNAMTSGGGTGGSNQSQFFLFPNRSGSGMASGAISPRDNYASVRREN 565

Query: 53  RELKLEISRLRVRLSELEKEQMFMKQGMIHKVGNGRTF--LTSISKGIGRIAMFSSQGRG 110
           REL+LE++R+R+RL++LEK+ + MK+  +      R +  L  +S+G+ ++     + R 
Sbjct: 566 RELRLEVARMRMRLTDLEKDHVSMKRDFVKPQSRRRRYGMLRKLSRGLNKLNAIVLRFRS 625

Query: 111 KRQ--KSVRKSREGKTGRSRRY 130
            +    S +K  E KT   RR+
Sbjct: 626 SQSVASSGKKHTEEKTNSERRF 647


>AT2G47860.1 | Symbols:  | Phototropic-responsive NPH3 family
           protein | chr2:19599979-19602088 FORWARD LENGTH=635
          Length = 635

 Score = 85.5 bits (210), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 55/142 (38%), Positives = 81/142 (57%), Gaps = 12/142 (8%)

Query: 1   MVVQVLYVEQLRLKNAXXXXXXXXXXXQ--------RISSGVPSAAMSPRDNYASLRREN 52
           + VQVL+ EQ RLKNA           Q        R  SG+ S A+SPRDNYAS+RREN
Sbjct: 483 IAVQVLFYEQTRLKNAMTSGGGTGGSNQSQFFLFPNRSGSGMASGAISPRDNYASVRREN 542

Query: 53  RELKLEISRLRVRLSELEKEQMFMKQGMIHKVGNGRTF--LTSISKGIGRIAMFSSQGRG 110
           REL+LE++R+R+RL++LEK+ + MK+  +      R +  L  +S+G+ ++     + R 
Sbjct: 543 RELRLEVARMRMRLTDLEKDHVSMKRDFVKPQSRRRRYGMLRKLSRGLNKLNAIVLRFRS 602

Query: 111 KRQ--KSVRKSREGKTGRSRRY 130
            +    S +K  E KT   RR+
Sbjct: 603 SQSVASSGKKHTEEKTNSERRF 624