Miyakogusa Predicted Gene

Lj0g3v0269409.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0269409.2 tr|G7IL24|G7IL24_MEDTR E3 ubiquitin-protein
ligase UPL6 OS=Medicago truncatula GN=MTR_2g033040 PE=4 ,91.49,0,Hect,
E3 ligase catalytic domain,HECT; HECT,HECT; PREDICTED: HYPOTHETICAL
PROTEIN, PARTIAL,NULL; HEC,CUFF.17808.2
         (94 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G17205.2 | Symbols: UPL6 | ubiquitin protein ligase 6 | chr3:...   167   1e-42
AT3G17205.3 | Symbols: UPL6 | ubiquitin protein ligase 6 | chr3:...   167   1e-42
AT3G17205.1 | Symbols: UPL6 | ubiquitin protein ligase 6 | chr3:...   167   1e-42
AT3G53090.2 | Symbols: UPL7 | ubiquitin-protein ligase 7 | chr3:...   103   2e-23
AT3G53090.1 | Symbols: UPL7 | ubiquitin-protein ligase 7 | chr3:...   103   2e-23
AT1G55860.1 | Symbols: UPL1 | ubiquitin-protein ligase 1 | chr1:...    84   2e-17
AT1G55860.2 | Symbols: UPL1 | ubiquitin-protein ligase 1 | chr1:...    84   2e-17
AT1G70320.1 | Symbols: UPL2 | ubiquitin-protein ligase 2 | chr1:...    83   4e-17
AT5G02880.1 | Symbols: UPL4 | ubiquitin-protein ligase 4 | chr5:...    75   1e-14
AT4G38600.1 | Symbols: KAK, UPL3 | HEAT repeat ;HECT-domain (ubi...    70   3e-13
AT4G38600.2 | Symbols: KAK, UPL3 | HEAT repeat ;HECT-domain (ubi...    67   3e-12

>AT3G17205.2 | Symbols: UPL6 | ubiquitin protein ligase 6 |
            chr3:5873528-5881132 FORWARD LENGTH=1015
          Length = 1015

 Score =  167 bits (423), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 76/94 (80%), Positives = 87/94 (92%)

Query: 1    MLWEVLKGFSMENKKKFLKFVTGCSRGPLLGFRYLEPLFCIQRAGGNASEEALDRLPTSA 60
            M WEV+K FS EN+KKFLKFVTGCSRGPLLGF+YLEP FCIQRA G+AS E++DRLPTSA
Sbjct: 922  MFWEVMKSFSTENQKKFLKFVTGCSRGPLLGFKYLEPAFCIQRAAGSASNESVDRLPTSA 981

Query: 61   TCMNLLKLPPYRSKEQMETKLLYAINADAGFDLS 94
            TCMNLLKLPPY+SKE +ETKL+YAI+A+AGFDLS
Sbjct: 982  TCMNLLKLPPYQSKELLETKLMYAISAEAGFDLS 1015


>AT3G17205.3 | Symbols: UPL6 | ubiquitin protein ligase 6 |
            chr3:5873528-5881132 FORWARD LENGTH=1029
          Length = 1029

 Score =  167 bits (423), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 76/94 (80%), Positives = 87/94 (92%)

Query: 1    MLWEVLKGFSMENKKKFLKFVTGCSRGPLLGFRYLEPLFCIQRAGGNASEEALDRLPTSA 60
            M WEV+K FS EN+KKFLKFVTGCSRGPLLGF+YLEP FCIQRA G+AS E++DRLPTSA
Sbjct: 936  MFWEVMKSFSTENQKKFLKFVTGCSRGPLLGFKYLEPAFCIQRAAGSASNESVDRLPTSA 995

Query: 61   TCMNLLKLPPYRSKEQMETKLLYAINADAGFDLS 94
            TCMNLLKLPPY+SKE +ETKL+YAI+A+AGFDLS
Sbjct: 996  TCMNLLKLPPYQSKELLETKLMYAISAEAGFDLS 1029


>AT3G17205.1 | Symbols: UPL6 | ubiquitin protein ligase 6 |
            chr3:5873528-5881132 FORWARD LENGTH=1029
          Length = 1029

 Score =  167 bits (423), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 76/94 (80%), Positives = 87/94 (92%)

Query: 1    MLWEVLKGFSMENKKKFLKFVTGCSRGPLLGFRYLEPLFCIQRAGGNASEEALDRLPTSA 60
            M WEV+K FS EN+KKFLKFVTGCSRGPLLGF+YLEP FCIQRA G+AS E++DRLPTSA
Sbjct: 936  MFWEVMKSFSTENQKKFLKFVTGCSRGPLLGFKYLEPAFCIQRAAGSASNESVDRLPTSA 995

Query: 61   TCMNLLKLPPYRSKEQMETKLLYAINADAGFDLS 94
            TCMNLLKLPPY+SKE +ETKL+YAI+A+AGFDLS
Sbjct: 996  TCMNLLKLPPYQSKELLETKLMYAISAEAGFDLS 1029


>AT3G53090.2 | Symbols: UPL7 | ubiquitin-protein ligase 7 |
            chr3:19679273-19684453 FORWARD LENGTH=1142
          Length = 1142

 Score =  103 bits (258), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 49/100 (49%), Positives = 65/100 (65%), Gaps = 6/100 (6%)

Query: 1    MLWEVLKGFSMENKKKFLKFVTGCSRGPLLGFRYLEPLFCIQRAGGNASEEA------LD 54
            + WEV+KGF    +   LKFVT CSR PLLGF+YL+P F I +   + S  A      ++
Sbjct: 1043 IFWEVMKGFEPSERCLLLKFVTSCSRAPLLGFKYLQPTFIIHKVSCDTSLWAAIGGQDVE 1102

Query: 55   RLPTSATCMNLLKLPPYRSKEQMETKLLYAINADAGFDLS 94
            RLP+++TC N LKLP Y+    M  KLLYAI ++AGF+LS
Sbjct: 1103 RLPSASTCYNTLKLPTYKRASTMREKLLYAITSNAGFELS 1142


>AT3G53090.1 | Symbols: UPL7 | ubiquitin-protein ligase 7 |
            chr3:19679273-19684453 FORWARD LENGTH=1142
          Length = 1142

 Score =  103 bits (258), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 49/100 (49%), Positives = 65/100 (65%), Gaps = 6/100 (6%)

Query: 1    MLWEVLKGFSMENKKKFLKFVTGCSRGPLLGFRYLEPLFCIQRAGGNASEEA------LD 54
            + WEV+KGF    +   LKFVT CSR PLLGF+YL+P F I +   + S  A      ++
Sbjct: 1043 IFWEVMKGFEPSERCLLLKFVTSCSRAPLLGFKYLQPTFIIHKVSCDTSLWAAIGGQDVE 1102

Query: 55   RLPTSATCMNLLKLPPYRSKEQMETKLLYAINADAGFDLS 94
            RLP+++TC N LKLP Y+    M  KLLYAI ++AGF+LS
Sbjct: 1103 RLPSASTCYNTLKLPTYKRASTMREKLLYAITSNAGFELS 1142


>AT1G55860.1 | Symbols: UPL1 | ubiquitin-protein ligase 1 |
            chr1:20879900-20895393 REVERSE LENGTH=3930
          Length = 3930

 Score = 84.0 bits (206), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 43/94 (45%), Positives = 62/94 (65%), Gaps = 1/94 (1%)

Query: 2    LWEVLKGFSMENKKKFLKFVTGCSRGPLLGFRYLEPLFCIQRAGGNASEEALDRLPTSAT 61
             WEV+K FS E+  +FL+FVTG S+ PL GF+ L+ +   QR   + +  A +RLP++ T
Sbjct: 3837 FWEVVKAFSKEDMARFLQFVTGTSKVPLEGFKALQGISGPQRLQIHKAYGAPERLPSAHT 3896

Query: 62   CMNLLKLPPYRSKEQMETKLLYAIN-ADAGFDLS 94
            C N L LP Y+SKEQ++ +LL AI+ A  GF  +
Sbjct: 3897 CFNQLDLPEYQSKEQLQERLLLAIHEASEGFGFA 3930


>AT1G55860.2 | Symbols: UPL1 | ubiquitin-protein ligase 1 |
            chr1:20879900-20892910 REVERSE LENGTH=3681
          Length = 3681

 Score = 84.0 bits (206), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 43/94 (45%), Positives = 62/94 (65%), Gaps = 1/94 (1%)

Query: 2    LWEVLKGFSMENKKKFLKFVTGCSRGPLLGFRYLEPLFCIQRAGGNASEEALDRLPTSAT 61
             WEV+K FS E+  +FL+FVTG S+ PL GF+ L+ +   QR   + +  A +RLP++ T
Sbjct: 3588 FWEVVKAFSKEDMARFLQFVTGTSKVPLEGFKALQGISGPQRLQIHKAYGAPERLPSAHT 3647

Query: 62   CMNLLKLPPYRSKEQMETKLLYAIN-ADAGFDLS 94
            C N L LP Y+SKEQ++ +LL AI+ A  GF  +
Sbjct: 3648 CFNQLDLPEYQSKEQLQERLLLAIHEASEGFGFA 3681


>AT1G70320.1 | Symbols: UPL2 | ubiquitin-protein ligase 2 |
            chr1:26488745-26501281 REVERSE LENGTH=3658
          Length = 3658

 Score = 82.8 bits (203), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 42/94 (44%), Positives = 63/94 (67%), Gaps = 1/94 (1%)

Query: 2    LWEVLKGFSMENKKKFLKFVTGCSRGPLLGFRYLEPLFCIQRAGGNASEEALDRLPTSAT 61
             WEV+K FS E+  +FL+FVTG S+ PL GF+ L+ +   QR   + +  + +RLP++ T
Sbjct: 3565 FWEVVKAFSKEDMARFLQFVTGTSKVPLEGFKALQGISGPQRLQIHKAYGSPERLPSAHT 3624

Query: 62   CMNLLKLPPYRSKEQMETKLLYAIN-ADAGFDLS 94
            C N L LP Y+SKEQ++ +LL AI+ A+ GF  +
Sbjct: 3625 CFNQLDLPEYQSKEQVQERLLLAIHEANEGFGFA 3658


>AT5G02880.1 | Symbols: UPL4 | ubiquitin-protein ligase 4 |
            chr5:662643-668847 FORWARD LENGTH=1502
          Length = 1502

 Score = 74.7 bits (182), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 43/94 (45%), Positives = 54/94 (57%), Gaps = 3/94 (3%)

Query: 2    LWEVLKGFSMENKKKFLKFVTGCSRGPLLGFRYLEPLFCIQRAGGNASEEALDRLPTSAT 61
            L ++L  F  E ++ FL+FVTG  R P  G   L P   I R  G+ S +    LP+  T
Sbjct: 1411 LLQILHEFDREQQRAFLQFVTGSPRLPHGGLASLSPKLTIVRKHGSDSSDT--DLPSVMT 1468

Query: 62   CMNLLKLPPYRSKEQMETKLLYAINADAG-FDLS 94
            C N LKLPPY SKE+M+ KL+YAI    G F LS
Sbjct: 1469 CANYLKLPPYSSKEKMKEKLIYAITEGQGSFHLS 1502


>AT4G38600.1 | Symbols: KAK, UPL3 | HEAT repeat ;HECT-domain
            (ubiquitin-transferase) | chr4:18041503-18049292 REVERSE
            LENGTH=1888
          Length = 1888

 Score = 69.7 bits (169), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 44/104 (42%), Positives = 54/104 (51%), Gaps = 11/104 (10%)

Query: 2    LWEVLKGFSMENKKKFLKFVTGCSRGPLLGFRYLEPLFCIQRAGGNAS----------EE 51
            L E++   + + ++ F +FVTG  R P  G   L P   I R   + S          E 
Sbjct: 1785 LLEIMGELTADQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTSSAAANGAGASET 1844

Query: 52   ALDRLPTSATCMNLLKLPPYRSKEQMETKLLYAINADAG-FDLS 94
            A D LP+  TC N LKLPPY +KE M  KLLYAIN   G FDLS
Sbjct: 1845 ADDDLPSVMTCANYLKLPPYSTKEIMYKKLLYAINEGQGSFDLS 1888


>AT4G38600.2 | Symbols: KAK, UPL3 | HEAT repeat ;HECT-domain
            (ubiquitin-transferase) | chr4:18041503-18049073 REVERSE
            LENGTH=1794
          Length = 1794

 Score = 67.0 bits (162), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 42/101 (41%), Positives = 52/101 (51%), Gaps = 11/101 (10%)

Query: 5    VLKGFSMENKKKFLKFVTGCSRGPLLGFRYLEPLFCIQRAGGNAS----------EEALD 54
            ++   + + ++ F +FVTG  R P  G   L P   I R   + S          E A D
Sbjct: 1694 IMGELTADQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTSSAAANGAGASETADD 1753

Query: 55   RLPTSATCMNLLKLPPYRSKEQMETKLLYAINADAG-FDLS 94
             LP+  TC N LKLPPY +KE M  KLLYAIN   G FDLS
Sbjct: 1754 DLPSVMTCANYLKLPPYSTKEIMYKKLLYAINEGQGSFDLS 1794