Miyakogusa Predicted Gene

Lj0g3v0269309.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0269309.1 Non Chatacterized Hit- tr|D7KU27|D7KU27_ARALL
Putative uncharacterized protein OS=Arabidopsis
lyrata,35.09,0.0000000001, ,CUFF.17793.1
         (152 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G43260.1 | Symbols:  | hAT transposon superfamily protein | c...    49   1e-06

>AT1G43260.1 | Symbols:  | hAT transposon superfamily protein |
           chr1:16318253-16319234 FORWARD LENGTH=294
          Length = 294

 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 32/59 (54%), Gaps = 1/59 (1%)

Query: 58  VHQYIARFWYQAGLSFNMVKLQSFHDMLAAVGSFRPHLKAPPYHDIRVPLLTKEEEKRI 116
           VHQY+AR+ Y  G+ FN +       ML   G F P +  P  + +R PLL KEE  R+
Sbjct: 35  VHQYVARWVYSHGIPFNAIANDDLRRMLEVAGQFGPGVTPPSQYQLREPLL-KEEVVRM 92