Miyakogusa Predicted Gene

Lj0g3v0269239.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0269239.1 Non Chatacterized Hit- tr|K4CH48|K4CH48_SOLLC
Uncharacterized protein OS=Solanum lycopersicum
GN=Sol,55.91,2e-19,UBA-like,UBA-like;
UBA,Ubiquitin-associated/translation elongation factor EF1B,
N-terminal; SUBFAMIL,CUFF.17782.1
         (125 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G20630.1 | Symbols: UBP14, TTN6, ATUBP14, PER1 | ubiquitin-sp...   101   1e-22

>AT3G20630.1 | Symbols: UBP14, TTN6, ATUBP14, PER1 |
           ubiquitin-specific protease 14 | chr3:7203001-7208340
           REVERSE LENGTH=797
          Length = 797

 Score =  101 bits (252), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 46/71 (64%), Positives = 58/71 (81%), Gaps = 5/71 (7%)

Query: 1   MNWLLSHMDDPDIDTPIFESHGSETLTNVDQSKVDSLISFGFQEEISRKALKASGGDIDK 60
           MNWLLSHMDDPDID PI     S   +++DQS VD+L+SFGF E+++RKALKASGGDI+K
Sbjct: 648 MNWLLSHMDDPDIDAPI-----SHQTSDIDQSSVDTLLSFGFAEDVARKALKASGGDIEK 702

Query: 61  ATYWILSNPDA 71
           AT W+ +NP+A
Sbjct: 703 ATDWVFNNPNA 713