Miyakogusa Predicted Gene

Lj0g3v0269099.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0269099.1 Non Chatacterized Hit- tr|A5BUF2|A5BUF2_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,75.95,1e-18,seg,NULL; coiled-coil,NULL; Use1,Vesicle transport
protein, Use1; SUBFAMILY NOT NAMED,NULL; FAMILY N,gene.g20879.t1.1
         (79 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G55600.1 | Symbols:  | Membrane fusion protein Use1 | chr3:20...   104   1e-23
AT1G54110.1 | Symbols:  | Membrane fusion protein Use1 | chr1:20...    91   2e-19

>AT3G55600.1 | Symbols:  | Membrane fusion protein Use1 |
          chr3:20620682-20622341 FORWARD LENGTH=240
          Length = 240

 Score =  104 bits (259), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 49/75 (65%), Positives = 60/75 (80%)

Query: 1  MGISKTEVNLKRLLXXXXXXXXXXKLVHYVATLREQLEQLAEEKTPEGLPRISKAILNDY 60
          MGISKTE+NL+RLL          KL+HYVATLREQLEQL+EEKTPEGLPR++KA +N+Y
Sbjct: 2  MGISKTEINLRRLLSAAPNQQNQSKLMHYVATLREQLEQLSEEKTPEGLPRVTKAKVNEY 61

Query: 61 SEKIEAIACKLVNSE 75
           EKIEA+A K+ + E
Sbjct: 62 YEKIEAVASKIASQE 76


>AT1G54110.1 | Symbols:  | Membrane fusion protein Use1 |
          chr1:20199909-20201623 FORWARD LENGTH=236
          Length = 236

 Score = 90.5 bits (223), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 43/72 (59%), Positives = 53/72 (73%)

Query: 1  MGISKTEVNLKRLLXXXXXXXXXXKLVHYVATLREQLEQLAEEKTPEGLPRISKAILNDY 60
          MGI KTE+N  RLL          KL+HYVATLREQLEQL+EEKT EGLPR++ A +N+Y
Sbjct: 1  MGIGKTEINFMRLLSAAPNQQNQSKLMHYVATLREQLEQLSEEKTLEGLPRVTNAKVNEY 60

Query: 61 SEKIEAIACKLV 72
           EKIEA+  ++V
Sbjct: 61 YEKIEAVVSRIV 72