Miyakogusa Predicted Gene

Lj0g3v0268989.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0268989.1 Non Chatacterized Hit- tr|I3SUJ1|I3SUJ1_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,99.29,0,L
domain-like,NULL; LRR,Leucine-rich repeat; no description,NULL; U2
SMALL NUCLEAR RIBONUCLEOPROTEIN,CUFF.17777.1
         (280 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G09760.1 | Symbols: U2A' | U2 small nuclear ribonucleoprotein...   368   e-102

>AT1G09760.1 | Symbols: U2A' | U2 small nuclear ribonucleoprotein A
           | chr1:3159476-3161603 REVERSE LENGTH=249
          Length = 249

 Score =  368 bits (945), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 187/239 (78%), Positives = 206/239 (86%), Gaps = 5/239 (2%)

Query: 1   MVRLTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTLDLSDNEIVKLENI 60
           MV+LTADLIWKSPHFFNAIKERELDLRGNKI VIENLGATEDQFDT+DLSDNEIVKLEN 
Sbjct: 1   MVKLTADLIWKSPHFFNAIKERELDLRGNKIPVIENLGATEDQFDTIDLSDNEIVKLENF 60

Query: 61  PYLNRLGTLLINNNRVTRINPNIGEFLPNLHTLVLTNNRIVNLVEIDPLASLPKLQFLSL 120
           PYLNRLGTLLINNNR+TRINPN+GEFLP LH+LVLTNNR+VNLVEIDPLAS+PKLQ+LSL
Sbjct: 61  PYLNRLGTLLINNNRITRINPNLGEFLPKLHSLVLTNNRLVNLVEIDPLASIPKLQYLSL 120

Query: 121 LDNNITKKPNYRLYVISKLDSLRVLDFKKVKNKERLEAKNLFGSEEAIENAQKTPVKTIS 180
           LDNNITKK NYRLYVI KL SLRVLDF K+K KER EA +LF S+EA E      VK +S
Sbjct: 121 LDNNITKKANYRLYVIHKLKSLRVLDFIKIKAKERAEAASLFSSKEAEEE-----VKKVS 175

Query: 181 PAETPDVSEATEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKALKSGLLPEDL 239
             E   VSE  E  +TPKVVAPT EQI+AIKAAI+NSQT+EE+ARLE+ALK G +P  L
Sbjct: 176 REEVKKVSETAENPETPKVVAPTAEQILAIKAAIINSQTIEEIARLEQALKFGQVPAGL 234