Miyakogusa Predicted Gene

Lj0g3v0268949.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0268949.1 tr|B9I2M0|B9I2M0_POPTR Predicted protein
(Fragment) OS=Populus trichocarpa GN=POPTRDRAFT_892121
PE=4,33.85,2e-18,STRUCTURAL CONSTITUENT OF RIBOSOME,NULL; 60S
RIBOSOMAL PROTEIN L34,Ribosomal protein L34Ae; seg,NULL,CUFF.17767.1
         (569 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G39785.1 | Symbols:  | Protein of unknown function (DUF1666) ...   402   e-112
AT5G39785.2 | Symbols:  | Protein of unknown function (DUF1666) ...   398   e-111
AT1G69610.1 | Symbols:  | Protein of unknown function (DUF1666) ...   254   9e-68
AT3G20260.1 | Symbols:  | Protein of unknown function (DUF1666) ...   122   7e-28
AT1G73850.1 | Symbols:  | Protein of unknown function (DUF1666) ...    97   4e-20
AT3G01175.1 | Symbols:  | Protein of unknown function (DUF1666) ...    64   3e-10

>AT5G39785.1 | Symbols:  | Protein of unknown function (DUF1666) |
           chr5:15929257-15932215 FORWARD LENGTH=606
          Length = 606

 Score =  402 bits (1034), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 217/414 (52%), Positives = 280/414 (67%), Gaps = 26/414 (6%)

Query: 173 SNRFDTLWEHQDLIEQLKMELKKVRATG-LPTILEDSES----PRIMEDLKPWKIDE--K 225
           +N F++LWEHQDLIEQLKME+KKV+A G L TILE+ E     P+IMEDLKPW+I+E  K
Sbjct: 200 TNGFESLWEHQDLIEQLKMEMKKVKAIGGLTTILEEEEEDDDCPKIMEDLKPWRIEEEKK 259

Query: 226 FQHGSTKNELPKFYKSYRERMRKFDILNYQKMYALVSWKLAGFLQSKDPLQSFSTHKXXX 285
           F+H  T  E+ KF++SYRERMRK DIL++QK YAL      G LQSK P Q+ ST     
Sbjct: 260 FKHVDTIGEVHKFHRSYRERMRKLDILSFQKSYAL------GLLQSKSPQQATSTLGSNP 313

Query: 286 XXXXXXXXXXRGFHIYRRRKIEAAHDPTKKFMRELYCDLETVYVGHLCLSWEFLQWEYGK 345
                         +++ +K E   +P  +F++E+  +LE VYVG +CLSWE L W+Y K
Sbjct: 314 SQTSFSSVFSVNIRLWKAKKSEI--EPMVQFVKEIQGELENVYVGQMCLSWEILHWQYEK 371

Query: 346 ALELWESDGYGMRRFNEVAGEFQQFQVLLQRFMENELFQCPRVENYARNRCAMKNLLQVP 405
           A+EL ESD YG RR+NEVAGEFQQFQVLLQRF+ENE F+ PRV++Y + RC ++NLLQ+P
Sbjct: 372 AIELLESDVYGSRRYNEVAGEFQQFQVLLQRFLENEPFEEPRVQHYIKRRCVLRNLLQIP 431

Query: 406 VIREDNAKDKKKYRER---EADKDAITSGMLVEVLEESIRTIWRFIRADKDASSL---KG 459
           VIRED  KDKK  R R   E +   I S  LVE++EE+IR  WRF+R DK  SS+   K 
Sbjct: 432 VIREDGNKDKKNGRRRDYEENNDGVIKSDQLVEIMEETIRLFWRFVRCDKLTSSIHDQKS 491

Query: 460 AREKQVEL---QDPSDSELLVEIRTXXXXXXXXXXXXXXSGCCILKKFQKHHEDGT--DQ 514
             + Q+E    +D  D E+  E+++              S  CI+++FQKH E+ +  DQ
Sbjct: 492 RTKSQIEPDHEEDSEDLEMFAEVKSQLQNKEKRLRDVLKSERCIIRRFQKHKEEDSTEDQ 551

Query: 515 VLYFFSQVDMKLVWRVLNMSRITTDQLAWCRSKLNKINFVNRRIQVEPSFLLFP 568
           VL+FFSQVDMKLV RVLNMS++T D L WC +KL KINFVNRR+ ++PSF LFP
Sbjct: 552 VLHFFSQVDMKLVTRVLNMSKLTRDHLVWCHNKLTKINFVNRRLHLDPSFCLFP 605


>AT5G39785.2 | Symbols:  | Protein of unknown function (DUF1666) |
           chr5:15929257-15932215 FORWARD LENGTH=607
          Length = 607

 Score =  398 bits (1022), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 217/415 (52%), Positives = 280/415 (67%), Gaps = 27/415 (6%)

Query: 173 SNRFDTLWEHQDLIEQLKMELKKVRATG-LPTILEDSE----SPRIMEDLKPWKIDE--K 225
           +N F++LWEHQDLIEQLKME+KKV+A G L TILE+ E     P+IMEDLKPW+I+E  K
Sbjct: 200 TNGFESLWEHQDLIEQLKMEMKKVKAIGGLTTILEEEEEDDDCPKIMEDLKPWRIEEEKK 259

Query: 226 FQHGSTKNELPKFYKSYRERMRKFDILNYQKMYALVSWKLAGFLQSKDPLQSFSTHKXXX 285
           F+H  T  E+ KF++SYRERMRK DIL++QK YAL      G LQSK P Q+ ST     
Sbjct: 260 FKHVDTIGEVHKFHRSYRERMRKLDILSFQKSYAL------GLLQSKSPQQATSTLGSNP 313

Query: 286 XXXXXXXXXXRGFHIYRRRKIEAAHDPTKKFMRELYCDLETVYVGHLCLSWEFLQWEYGK 345
                         +++ +K E   +P  +F++E+  +LE VYVG +CLSWE L W+Y K
Sbjct: 314 SQTSFSSVFSVNIRLWKAKKSEI--EPMVQFVKEIQGELENVYVGQMCLSWEILHWQYEK 371

Query: 346 ALELWESDGYGMRRFNEVAGEFQQFQVLLQRFMENELFQCPRVENYARNRCAMKNLLQVP 405
           A+EL ESD YG RR+NEVAGEFQQFQVLLQRF+ENE F+ PRV++Y + RC ++NLLQ+P
Sbjct: 372 AIELLESDVYGSRRYNEVAGEFQQFQVLLQRFLENEPFEEPRVQHYIKRRCVLRNLLQIP 431

Query: 406 VIREDNAKDKKKYRER---EADKDAITSGMLVEVLEESIRTIWRFIRADKDASSL---KG 459
           VIRED  KDKK  R R   E +   I S  LVE++EE+IR  WRF+R DK  SS+   K 
Sbjct: 432 VIREDGNKDKKNGRRRDYEENNDGVIKSDQLVEIMEETIRLFWRFVRCDKLTSSIHDQKS 491

Query: 460 AREKQVEL---QDPSDSELLVEIRTXXXXXXXXXXX-XXXSGCCILKKFQKHHEDGT--D 513
             + Q+E    +D  D E+  E+++               S  CI+++FQKH E+ +  D
Sbjct: 492 RTKSQIEPDHEEDSEDLEMFAEVKSQLQNVSEKRLRDVLKSERCIIRRFQKHKEEDSTED 551

Query: 514 QVLYFFSQVDMKLVWRVLNMSRITTDQLAWCRSKLNKINFVNRRIQVEPSFLLFP 568
           QVL+FFSQVDMKLV RVLNMS++T D L WC +KL KINFVNRR+ ++PSF LFP
Sbjct: 552 QVLHFFSQVDMKLVTRVLNMSKLTRDHLVWCHNKLTKINFVNRRLHLDPSFCLFP 606


>AT1G69610.1 | Symbols:  | Protein of unknown function (DUF1666) |
           chr1:26186954-26189349 FORWARD LENGTH=636
          Length = 636

 Score =  254 bits (650), Expect = 9e-68,   Method: Compositional matrix adjust.
 Identities = 160/396 (40%), Positives = 231/396 (58%), Gaps = 30/396 (7%)

Query: 181 EHQDLIEQLKMELKKVRATGLPTILEDSESPRIMEDLKPWKIDEKF-QHGSTKNELPKFY 239
           EH D+IE+LK EL+  R  GL TILE+SE+P  +++LKP KI+ K  QH     E+ K Y
Sbjct: 262 EHSDVIEKLKTELRTARTGGLCTILEESETP--LQELKPLKIEPKPDQHKDRIAEIHKVY 319

Query: 240 KSYRERMRKFDILNYQKMYALVSWKLAGFLQSKDPLQSFSTHKXXXXXXXXXXXXXRGFH 299
           K+Y  +MRK D+++ Q M+++   KL     S  P  S +T K                +
Sbjct: 320 KNYAVKMRKLDVIDSQTMHSISLLKLK---DSSKP--SRNTDKPPKSSLHQ--------N 366

Query: 300 IYRRRKIEAAHDPTKKFMRELYCDLETVYVGHLCLSWEFLQWEYGKALELWESDGYGMRR 359
           I+  +K     DP+++ ++E   D ETVYVG +CLSWE L+W+Y K LE          +
Sbjct: 367 IWPFKKHTLECDPSERLVKEASRDFETVYVGQVCLSWEMLRWQYDKVLEF--DSQVTTYQ 424

Query: 360 FNEVAGEFQQFQVLLQRFMENELFQ-CPRVENYARNRCAMKNLLQVPVIREDNAKDKKKY 418
           +N VAGEFQ FQVLLQRF+ENE FQ   RVE Y +NR   +N LQ+P++R+D +  KK  
Sbjct: 425 YNLVAGEFQLFQVLLQRFVENEPFQNSSRVETYLKNRRHFQNFLQIPLVRDDRSSKKKCR 484

Query: 419 REREADKDAITSGMLVEVLEESIRTIWRFIRADKD--ASSLKGAREKQVELQDPSDSELL 476
            E E    A+ + ML E++ ES+   W F+ ADKD   S +K + + QV  QD  D ELL
Sbjct: 485 YEGEF---AVKTEMLREIIRESMSVFWEFLCADKDEFTSMMKVSHQTQVSPQDSLDLELL 541

Query: 477 VEIRTXXXXXXXXXXXXXXSGCCILKKFQKHHEDGT----DQVLYFFSQVDMKLVWRVLN 532
            +IRT              S  CI+KK +K+    +    D++L   ++++++LV RV+ 
Sbjct: 542 TDIRTHLQKKEKKLKEIQRSQSCIVKKLKKNESKSSIGVKDELL--IAKIELRLVSRVMY 599

Query: 533 MSRITTDQLAWCRSKLNKINFVNRRIQVEPSFLLFP 568
           MS++TT++L WC+ KL KI+F  R+I +EP F L P
Sbjct: 600 MSKLTTEKLHWCQEKLEKISFNGRKIHMEPYFSLLP 635


>AT3G20260.1 | Symbols:  | Protein of unknown function (DUF1666) |
           chr3:7064190-7065751 REVERSE LENGTH=437
          Length = 437

 Score =  122 bits (306), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 93/257 (36%), Positives = 123/257 (47%), Gaps = 25/257 (9%)

Query: 321 YCDLETVYVGHLCLSWEFLQWEYGKALELWESDGYGMRRFNEVAGEFQQFQVLLQRFMEN 380
           Y DLET YV  LCL+WE L  +Y +   L          +N  A  FQQF VLLQR++EN
Sbjct: 196 YQDLETAYVAQLCLTWEALHCQYTQLSHLISCQPETPTCYNHTAQLFQQFLVLLQRYIEN 255

Query: 381 ELF-QCPRVENYARNRCAMKNLLQVPVIREDNAKDKKKYREREADKDA---ITSGMLVEV 436
           E F Q  R E YAR R AM  LLQ P I+     DKK     E +KD    + +  L++V
Sbjct: 256 EPFEQGSRSELYARARNAMPKLLQAPKIQ---GSDKK-----EMEKDTGFMVLADDLIKV 307

Query: 437 LEESIRTIWRFIRADKDASS-----LKGAREKQVELQDPSDSELLVEIRTXXXXXXXXXX 491
           +E SI T   F++ DK   +             V    P    LLV+             
Sbjct: 308 IESSILTFNVFLKMDKKKPNGGIHLFGNHNNNHVNSTTPL---LLVQSSIDKKRVKAKEL 364

Query: 492 XXXXSGCCILKKFQKHHEDGTDQVLYFFSQVDMKLVWRVLNMSRITTDQLAWCRSKLNKI 551
                G   L+K  K      + V   F+ +D+KL  RVL MS+I+ +QL WC  K+ K+
Sbjct: 365 SKKTKG---LRK--KSWPQTWEGVQLLFAAIDIKLATRVLRMSKISKEQLLWCEEKMKKL 419

Query: 552 NFVNRRIQVEPSFLLFP 568
           NF   ++Q  PS +LFP
Sbjct: 420 NFSAGKLQRHPSPILFP 436


>AT1G73850.1 | Symbols:  | Protein of unknown function (DUF1666) |
           chr1:27767375-27770386 FORWARD LENGTH=635
          Length = 635

 Score = 96.7 bits (239), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 78/262 (29%), Positives = 129/262 (49%), Gaps = 25/262 (9%)

Query: 321 YCDLETVYVGHLCLSWEFLQWEYGKALELWESDGYGMRRFNEV------AGEFQQFQVLL 374
           Y +LE+ YV  +CL+WE L W Y K  E   S     R FN+V      A +F+ F +LL
Sbjct: 383 YVELESAYVAQICLTWEALSWNY-KNFERKRSTT--QRSFNDVGCPAGIADQFRTFHILL 439

Query: 375 QRFMENELFQ-CPRVENYARNRCAMKNLLQVPVIREDNAKDKKKYREREADKDAITSGML 433
           QR++ENE ++   R E YAR R     LL VP  ++   +++K+    E  +  I+S   
Sbjct: 440 QRYVENEPYEHGRRPEIYARMRTLAPKLLLVPEYQDYEEEEEKEDENEEGFRSRISSASF 499

Query: 434 VEVLEESIRTIWRFIRADKDASSLK-----GAREKQVELQDPSDSELLVEIRTXXXXXXX 488
           + ++EE IRT   F++ADK+    K       R K+  + DP+    LV +         
Sbjct: 500 LMIMEECIRTFMNFLQADKEKPCQKIIKAFFGRSKRGPV-DPT----LVHLMKKVNTKKK 554

Query: 489 XXXXXXXSGCCILKKFQKHHEDGTDQVLYFFSQVDMKLVWRVLNMSRITTDQLAWCRSKL 548
                   G   ++K +   E+  + ++     +D+K+V RVL M+ +  + L WC  K+
Sbjct: 555 TKLKEMRRGGKYMRKKKMSIEEEMEILMGL---IDLKVVSRVLRMNEMNEENLHWCEEKM 611

Query: 549 NKINFV--NRRIQVEPSFLLFP 568
           +K+  +   + +Q + + L FP
Sbjct: 612 SKVKIIQGGKVLQRDSTPLFFP 633


>AT3G01175.1 | Symbols:  | Protein of unknown function (DUF1666) |
           chr3:59484-60845 FORWARD LENGTH=401
          Length = 401

 Score = 63.5 bits (153), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 50/167 (29%), Positives = 76/167 (45%), Gaps = 33/167 (19%)

Query: 239 YKSYRERMRKFDILNYQKMYALVSWKLAGFLQSKDPLQSFSTHKXXXXXXXXXXXXXRGF 298
           YK Y ERMR +DIL+  + Y L        + ++    S S                   
Sbjct: 263 YKKYCERMRWYDILSRDRSYGL------NVITNQLTASSLSLWG---------------- 300

Query: 299 HIYRRRKIEAAHDPTKKFMRELYCDLETVYVGHLCLSWEFLQWEYGKALELWESDGYGMR 358
                   + A    K+ M++   DLE VYV  +CLSWE LQ +Y    +         R
Sbjct: 301 --------KTAEKRIKQSMKK---DLELVYVAQVCLSWEALQHQYILVRDSSNPADSRGR 349

Query: 359 RFNEVAGEFQQFQVLLQRFMENELFQCPRVENYARNRCAMKNLLQVP 405
             ++++ EFQ FQVLL+RF+E+E  +  RV ++ + R  + +  QVP
Sbjct: 350 FDDDISREFQNFQVLLERFLEDERCEGKRVLSFVQRRFELISFFQVP 396