Miyakogusa Predicted Gene

Lj0g3v0268839.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0268839.1 Non Chatacterized Hit- tr|H2Y7U4|H2Y7U4_CIOSA
Uncharacterized protein OS=Ciona savignyi GN=Csa.9241
,36.48,1e-17,seg,NULL; coiled-coil,NULL;
Prp19_bind,Micro-fibrillar-associated protein 1, C-terminal; SUBFAMILY
N,CUFF.17759.1
         (277 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G17900.1 | Symbols:  | microfibrillar-associated protein-rela...   117   8e-27
AT4G08580.1 | Symbols:  | microfibrillar-associated protein-rela...   107   7e-24

>AT5G17900.1 | Symbols:  | microfibrillar-associated protein-related
           | chr5:5925144-5926690 FORWARD LENGTH=435
          Length = 435

 Score =  117 bits (293), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 63/117 (53%), Positives = 83/117 (70%), Gaps = 7/117 (5%)

Query: 1   MSVTAGVSDTVIAVRDKLRGKIGQTKVKRYWPGKVPXXXXXXXXXXXXXXXXXFRPNREA 60
           MSVTAGVS++ IAVR+KL+G IGQTKV+RYWPGK                    R  + +
Sbjct: 1   MSVTAGVSESAIAVREKLKGGIGQTKVRRYWPGKA------PEWAEEAEEDDDVRMQKVS 54

Query: 61  ALEEAFPRHEEDAAIVRKDDRRLRRLAESRIDNREEVRADHRRIRQAEIVSTIEEEA 117
            L+ AFP+++ D  + RKDD RLRRLA+++++NR+EVRADHRRIRQAEI+ T EEE+
Sbjct: 55  VLDRAFPKND-DLGVARKDDPRLRRLAKTKVENRDEVRADHRRIRQAEIIYTEEEES 110



 Score = 90.5 bits (223), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 49/92 (53%), Positives = 58/92 (63%), Gaps = 1/92 (1%)

Query: 184 GVAMVKPVFVPKSERDTIXXXXXXXXXXXXXXXXXXXXXXXXXXXTKQLVVEEIRKDHEI 243
           G+AM+KPVFVPK+ERDTI                           TKQ+VVEE+RKD EI
Sbjct: 177 GIAMIKPVFVPKAERDTIAERERLEAEEEALEELAKRKLEQRKLETKQIVVEEVRKDEEI 236

Query: 244 QRNMELG-ANIADVDTDDELNEAEEYEAWKVR 274
           ++N+ L  ANI DV+TDDELNEAEEYE WK R
Sbjct: 237 RKNILLEEANIGDVETDDELNEAEEYEVWKTR 268


>AT4G08580.1 | Symbols:  | microfibrillar-associated protein-related
           | chr4:5462190-5463718 FORWARD LENGTH=435
          Length = 435

 Score =  107 bits (268), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 57/107 (53%), Positives = 75/107 (70%), Gaps = 7/107 (6%)

Query: 1   MSVTAGVSDTVIAVRDKLRGKIGQTKVKRYWPGKVPXXXXXXXXXXXXXXXXXFRPNREA 60
           MSVTAGVS++ IAVR+KL+G IGQTKV+RYWPGK                    R  + +
Sbjct: 1   MSVTAGVSESAIAVREKLKGGIGQTKVRRYWPGKA------PEWAEEAEEDDDVRMQKFS 54

Query: 61  ALEEAFPRHEEDAAIVRKDDRRLRRLAESRIDNREEVRADHRRIRQA 107
            L+ AFP+++ D  + RKDD RLRRLA+++++NR+EVRADHRRIRQA
Sbjct: 55  VLDRAFPKND-DLGVARKDDPRLRRLAQTKVENRDEVRADHRRIRQA 100



 Score = 89.4 bits (220), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 48/92 (52%), Positives = 58/92 (63%), Gaps = 1/92 (1%)

Query: 184 GVAMVKPVFVPKSERDTIXXXXXXXXXXXXXXXXXXXXXXXXXXXTKQLVVEEIRKDHEI 243
           G+A++KPVFVPK+ERDTI                           TKQ+VVEE+RKD EI
Sbjct: 177 GIALIKPVFVPKAERDTIAERERLEAEEEALEELAKRKLEQRKIETKQIVVEEVRKDEEI 236

Query: 244 QRNMELG-ANIADVDTDDELNEAEEYEAWKVR 274
           ++N+ L  ANI DV+TDDELNEAEEYE WK R
Sbjct: 237 RKNILLEEANIGDVETDDELNEAEEYEVWKTR 268