Miyakogusa Predicted Gene

Lj0g3v0268809.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0268809.1 Non Chatacterized Hit- tr|I1N162|I1N162_SOYBN
Uncharacterized protein OS=Glycine max PE=4
SV=1,32.77,0.000000000002,seg,NULL,CUFF.17757.1
         (230 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G52900.1 | Symbols:  | unknown protein; Has 30201 Blast hits ...   135   3e-32

>AT5G52900.1 | Symbols:  | unknown protein; Has 30201 Blast hits to
           17322 proteins in 780 species: Archae - 12; Bacteria -
           1396; Metazoa - 17338; Fungi - 3422; Plants - 5037;
           Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
           BLink). | chr5:21452893-21453692 REVERSE LENGTH=235
          Length = 235

 Score =  135 bits (339), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 104/243 (42%), Positives = 142/243 (58%), Gaps = 30/243 (12%)

Query: 2   ETSHPL-SIESFSYSWLVNLKPSLE-SLDSSFRTSDLDASDETFSSYIEMDPRMPPSKRF 59
           E S PL  I+SFSYSWLVN  PSLE ++D   +T +  +S  +F   IEMDPR+PPS+RF
Sbjct: 7   EASMPLVPIDSFSYSWLVNF-PSLEATIDDHHQTYEDSSSSSSF---IEMDPRLPPSRRF 62

Query: 60  F-RNSHD--FKFDFQIS---QNSPLVDADELFSNGYLMPLFVESIEAYNASDENXXXXXX 113
           F + SH+  FKFD  +S   ++  LV ADELF +GY+MP  ++   A  A++E       
Sbjct: 63  FIKTSHESSFKFDNFVSFSDEDHSLVHADELFRDGYVMPYRLKPTSA--ATEEESEPLDT 120

Query: 114 XXXXXXXXXXXXXXXXXXXXRCPSLKRCKTLSRRMFQKYLNFLRPLCKRL---RGQNKSG 170
                               R     + + +S+ +  KYL+FL PLCKRL   R    +G
Sbjct: 121 TTSEKIDTRGLNSKPSPTSSR-----KLRRVSKWVLLKYLDFLTPLCKRLRRCRSAVTTG 175

Query: 171 S-NPEAMVKRTQSVKNRRHYSE--SSPRISVAYSADD--WRKSCDSDSSIYEAVLHCKRS 225
           S   ++ ++ T S ++R +  E  SSPRISV   ADD  WR+SCDS+SSIYEAVLHCK+S
Sbjct: 176 SIGMDSRIRVTTSCRSRVYSDEMTSSPRISV---ADDYYWRRSCDSESSIYEAVLHCKKS 232

Query: 226 IER 228
            E+
Sbjct: 233 FEK 235