Miyakogusa Predicted Gene

Lj0g3v0268649.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0268649.1 tr|B9HAE3|B9HAE3_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_561276 PE=4
SV=1,46.53,2e-18,seg,NULL,CUFF.17748.1
         (143 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G25240.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...    64   4e-11
AT5G62865.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...    55   2e-08
AT5G14890.1 | Symbols:  | NHL domain-containing protein | chr5:4...    52   2e-07
AT3G48020.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...    49   1e-06

>AT5G25240.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN:
           cellular_component unknown; EXPRESSED IN: 23 plant
           structures; EXPRESSED DURING: 13 growth stages; Has 1807
           Blast hits to 1807 proteins in 277 species: Archae - 0;
           Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385;
           Viruses - 0; Other Eukaryotes - 339 (source: NCBI
           BLink). | chr5:8746779-8747174 REVERSE LENGTH=131
          Length = 131

 Score = 63.5 bits (153), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 41/103 (39%), Positives = 57/103 (55%), Gaps = 10/103 (9%)

Query: 33  FKGFNLKWWQSHEEEGKRLIDQNGGGGE----GWMVEKMKKVKEASEVIAGPKWKNFIRK 88
           F+ F+   W+  ++E +     +G   E     W  EK+K +KE SE IAGPKWKNFIR 
Sbjct: 25  FRSFSFTRWRRGDDESRSRGGWSGCLQEERRGNWGSEKLKGLKEISEKIAGPKWKNFIRS 84

Query: 89  ISGQQKKKR----FQYDEQSYALNFNSRAESEDDEDMPPRFSA 127
            S  +KK R    F YD ++Y+LNF+   + +D    P RF A
Sbjct: 85  FSSGRKKMRRDVDFTYDLKNYSLNFDDGGDGKDSS--PERFVA 125


>AT5G62865.1 | Symbols:  | unknown protein; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT3G48020.1). | chr5:25234064-25234567 FORWARD
           LENGTH=167
          Length = 167

 Score = 55.1 bits (131), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 38/68 (55%), Gaps = 11/68 (16%)

Query: 53  DQNGGGGEG----WMVEKMKKVKEASEVIAGPKWKNFIRKISGQQKKKR-------FQYD 101
           D N  G  G    W +    K++E SE++AGP+WK FIR+ +   ++ R       FQYD
Sbjct: 48  DSNHSGDHGDEPRWWIRASLKIREWSEIVAGPRWKTFIRRFNRDPRRGRDWDASEKFQYD 107

Query: 102 EQSYALNF 109
             SY+LNF
Sbjct: 108 PLSYSLNF 115


>AT5G14890.1 | Symbols:  | NHL domain-containing protein |
           chr5:4818056-4821534 FORWARD LENGTH=754
          Length = 754

 Score = 51.6 bits (122), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/108 (34%), Positives = 51/108 (47%), Gaps = 21/108 (19%)

Query: 40  WWQSHEEEGKRLIDQNGGGGEGWMVEKMKKVKEASEVIAGPKWKNFIRKI---------- 89
           WWQ      K   D      E W V    K++E SE++AGPKWK FIR+           
Sbjct: 630 WWQRIRTVDKLEPD------ERWWVSGWMKMREWSEIVAGPKWKTFIRRFGRNHCCNGGI 683

Query: 90  ---SGQQKKKRFQYDEQSYALNFNSRAESEDDEDMPP--RFSARFSAP 132
                + +   F+YD  SY+LNF+   ++   ED  P   +S RF+AP
Sbjct: 684 DGGCNRPEHVSFRYDSWSYSLNFDDGKQTGHFEDEFPYRDYSMRFAAP 731


>AT3G48020.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: chloroplast;
           EXPRESSED IN: 11 plant structures; EXPRESSED DURING:
           LP.04 four leaves visible, 4 anthesis; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT5G62865.1); Has 82 Blast hits to 82 proteins in
           12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
           - 0; Plants - 82; Viruses - 0; Other Eukaryotes - 0
           (source: NCBI BLink). | chr3:17724593-17725000 FORWARD
           LENGTH=135
          Length = 135

 Score = 48.5 bits (114), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 15/77 (19%)

Query: 40  WWQSHEEEGKRLIDQNGGGGEGWMVEKMKKVKEASEVIAGPKWKNFIRKISGQQKK---- 95
           WWQ         I +N      W V    K++E SE++AGP+WK FIR+ +   ++    
Sbjct: 24  WWQR--------IHRNNHQEPRWWVRAFLKIREWSEIVAGPRWKTFIRRFNRDPRRGQDW 75

Query: 96  ---KRFQYDEQSYALNF 109
               +F+YD  SY L+F
Sbjct: 76  DDSDKFRYDPVSYTLSF 92