Miyakogusa Predicted Gene

Lj0g3v0268209.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0268209.1 tr|B9H0C6|B9H0C6_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_800704 PE=4
SV=1,76.69,0,NMD3,NMD3; SUBFAMILY NOT NAMED,NULL; NONSENSE-MEDIATED
MRNA DECAY PROTEIN 3,NULL; seg,NULL,CUFF.17706.1
         (374 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G03820.1 | Symbols:  | nonsense-mediated mRNA decay NMD3 fami...   435   e-122

>AT2G03820.1 | Symbols:  | nonsense-mediated mRNA decay NMD3 family
           protein | chr2:1165149-1166699 REVERSE LENGTH=516
          Length = 516

 Score =  435 bits (1119), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 213/347 (61%), Positives = 266/347 (76%), Gaps = 12/347 (3%)

Query: 1   MCDSCTRVAANPDQWIAAVQLRQHVSHRRTFFYLEQLILKHGAAARAIRIKQMHEGIDFF 60
           +C+SC+R  ANPDQW+A++QLRQHVSHRRTFFYLEQLIL+H AA+RAIRI+Q+ +GIDFF
Sbjct: 143 LCESCSRFQANPDQWVASIQLRQHVSHRRTFFYLEQLILRHDAASRAIRIQQVDQGIDFF 202

Query: 61  FSNKNHGEEFVKFLRKVAPIRSNGDNMQLVSHDTKSNEYNYKFTFSVEISPICREDLICL 120
           F NK+H   FV+FLRKV PI    D  QLVSHD KS+ YNYK+T+SV+I P+CREDL+CL
Sbjct: 203 FGNKSHANSFVEFLRKVVPIEYRQDQ-QLVSHDVKSSLYNYKYTYSVKICPVCREDLVCL 261

Query: 121 PHNVALSLGNLGPLVICTKVTNNIVLLDPFTLRHCFLDADKYWRA-FKSLLTSRQLXXXX 179
           P  VA  LGNLGPLV+CTKV++NI LLDP TLR  FLDA +YWR+ F+S LTSRQL    
Sbjct: 262 PSKVASGLGNLGPLVVCTKVSDNITLLDPRTLRCAFLDARQYWRSGFRSALTSRQL--VK 319

Query: 180 XXXXXXXXXXXXXXXGGTKYVLALAEVARVSDFGKNDTRFSIRTHLGHLLNPGDYALGYD 239
                          GG KY L+  ++AR SD GK    F ++THLGH+L PGD ALGYD
Sbjct: 320 YFVFDVEPPVGEATVGGQKYALSYVQIARESDIGK---MFYVQTHLGHILKPGDQALGYD 376

Query: 240 LHGANCNDIELDKF----KGPLPEAILVKKSYEEKRLKQRGKPRSWKLKSLNMEVDD-KG 294
           ++GAN ND E++K+    K  LPEAIL+KK YEE+R +++ K R+WKLKSL ME+DD +G
Sbjct: 377 IYGANVNDNEMEKYRLSVKNGLPEAILIKKCYEEQRERKQKKSRNWKLKSLPMEMDDSRG 436

Query: 295 RTDPDKMNSEYEQFLKDLEENPDLRFNISLYENKEYQPSDMASVTDG 341
           R DP+K + EYE+FL+DLEENP+LRFNISLY +K+YQ S+ AS+TDG
Sbjct: 437 RVDPEKTDKEYEEFLRDLEENPELRFNISLYRDKDYQASETASMTDG 483