Miyakogusa Predicted Gene

Lj0g3v0268089.3

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0268089.3 tr|A7RQ72|A7RQ72_NEMVE Predicted protein
OS=Nematostella vectensis GN=v1g236535 PE=4
SV=1,33.89,1e-16,zf-Nse,NULL; coiled-coil,NULL; seg,NULL;
UNCHARACTERIZED,NULL; UNCHARACTERIZED,E3 SUMO-protein
ligas,CUFF.17701.3
         (206 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G15150.1 | Symbols: HPY2, MMS21, ATMMS21 | RING/U-box superfa...   221   2e-58

>AT3G15150.1 | Symbols: HPY2, MMS21, ATMMS21 | RING/U-box
           superfamily protein | chr3:5102210-5104082 REVERSE
           LENGTH=249
          Length = 249

 Score =  221 bits (564), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 104/205 (50%), Positives = 142/205 (69%), Gaps = 5/205 (2%)

Query: 1   MREIAVQLEKDRLSDKVKELEDAXXXXXXXXXXXXHFSSAVQAFSNRYQPSEQFTDFHKL 60
           M+ IAVQLEK+  +DKVK+LE++            H S+A+Q+ +NRYQP EQ TDF KL
Sbjct: 39  MKNIAVQLEKENQTDKVKDLENSVAELLDLHSDCNHRSTAIQSVANRYQPVEQLTDFKKL 98

Query: 61  FEDEVSQFKANPTSDFSKHPLVRQFKEAVWKVHHEGQPLPGEEQEDIIMTSTQSNILNMT 120
            +DE ++ KA P+S      L+RQF+EAVW VHH G+P+PG++ EDI+MTSTQ  +LNMT
Sbjct: 99  LDDEFTKLKATPSSVPQNDHLMRQFREAVWNVHHAGEPMPGDDDEDIVMTSTQCPLLNMT 158

Query: 121 CPLTGKPLTELEEPVRSKECRHIYEKKAILEYI-RSKKTQCPISGCPRMLHADMVVHDPS 179
           CPL+GKP+TEL +PVRS +CRH+YEK  IL YI  +    CP++GC   L    V+ D  
Sbjct: 159 CPLSGKPVTELADPVRSMDCRHVYEKSVILHYIVNNPNANCPVAGCRGKLQNSKVICDAM 218

Query: 180 LPVEIDELRKMNRETN----VEDFT 200
           L  EI+E+R +N+++N    +EDFT
Sbjct: 219 LKFEIEEMRSLNKQSNRAEVIEDFT 243