Miyakogusa Predicted Gene

Lj0g3v0268089.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0268089.1 tr|A9RUT5|A9RUT5_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_70836
,36.09,4e-17,PRA1,Prenylated rab acceptor PRA1; seg,NULL,CUFF.17701.1
         (198 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G27540.1 | Symbols: PRA1.H | prenylated RAB acceptor 1.H | ch...   236   8e-63

>AT4G27540.1 | Symbols: PRA1.H | prenylated RAB acceptor 1.H |
           chr4:13753449-13754660 REVERSE LENGTH=241
          Length = 241

 Score =  236 bits (602), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 112/169 (66%), Positives = 135/169 (79%)

Query: 28  LFSRLVTLLSLFTLNPFSKLTAEDFAGDTPSWSRSFIGFCGSYSFPSSPSQARFRVLENV 87
           L SRLVT+ SL T+NPFSKL+A+DF+GDT  W+  FIG C SYSFPSS  QAR RV EN+
Sbjct: 73  LLSRLVTVSSLLTINPFSKLSADDFSGDTTPWTTGFIGNCDSYSFPSSSQQARMRVHENI 132

Query: 88  KRYARNYAFLFIVFFACALYKMPLALVGLISCLALWDFFKYCSDRWGLDQYPLIRQCLLR 147
           KR+ARNYA LFIVFFACALY+MPLALVGL+  LALW+ FKYCSD+W  D++P +R+  + 
Sbjct: 133 KRFARNYATLFIVFFACALYQMPLALVGLLGSLALWELFKYCSDKWKFDRHPSMRKLSIG 192

Query: 148 IAQCATAVILIFSNVQMALFCALSVGYAGVILHAAFRKLTPVKPPSSSR 196
           I QCATAV+L F NVQMALF AL++ Y+ +ILHA FRKLTP K P+  R
Sbjct: 193 IGQCATAVLLTFLNVQMALFSALAISYSVMILHAGFRKLTPSKKPTRGR 241