Miyakogusa Predicted Gene

Lj0g3v0266629.1
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0266629.1 Non Chatacterized Hit- tr|F6HUP3|F6HUP3_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,46.74,2e-19,SUBFAMILY NOT NAMED,NULL; FAMILY NOT NAMED,NULL; no
description,Glycoside hydrolase, catalytic domai,CUFF.17580.1
         (90 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G26130.1 | Symbols:  | Cellulase (glycosyl hydrolase family 5...    89   5e-19
AT1G13130.1 | Symbols:  | Cellulase (glycosyl hydrolase family 5...    84   1e-17
AT3G26140.1 | Symbols:  | Cellulase (glycosyl hydrolase family 5...    83   5e-17
AT5G16700.1 | Symbols:  | Glycosyl hydrolase superfamily protein...    74   2e-14
AT5G17500.1 | Symbols:  | Glycosyl hydrolase superfamily protein...    69   8e-13

>AT3G26130.1 | Symbols:  | Cellulase (glycosyl hydrolase family 5)
           protein | chr3:9553708-9555611 REVERSE LENGTH=551
          Length = 551

 Score = 89.4 bits (220), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 36/81 (44%), Positives = 54/81 (66%)

Query: 10  VNDTLNTFDVPEVVTGIAKNNPSVLKMTHIQAFEAVVLELGAQNVKVLLDNHVSEPKWCC 69
           V  +L  F + E V+G   +NP++L +  I+AF+ VV  L    V V+LDNH+S+P WCC
Sbjct: 99  VRQSLRKFRLFEAVSGFQTHNPTILDLPLIKAFQEVVYCLEKHRVMVILDNHISQPGWCC 158

Query: 70  GDDDENGFFHDRHFDPEEWVQ 90
            D+D NGFF D+H +P+ W++
Sbjct: 159 SDNDGNGFFGDKHLNPQVWIK 179


>AT1G13130.1 | Symbols:  | Cellulase (glycosyl hydrolase family 5)
           protein | chr1:4474726-4477820 FORWARD LENGTH=552
          Length = 552

 Score = 84.3 bits (207), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 34/80 (42%), Positives = 52/80 (65%)

Query: 10  VNDTLNTFDVPEVVTGIAKNNPSVLKMTHIQAFEAVVLELGAQNVKVLLDNHVSEPKWCC 69
           V  +  +  + + + G   NNPS++ +  I+A++ VV  LG  +V V+LDNH+++P WCC
Sbjct: 109 VRQSFQSLGLNDDIVGFQTNNPSIIDLPLIEAYKTVVTTLGNNDVMVILDNHLTKPGWCC 168

Query: 70  GDDDENGFFHDRHFDPEEWV 89
            +DD NGFF D+ FDP  WV
Sbjct: 169 ANDDGNGFFGDQFFDPTVWV 188


>AT3G26140.1 | Symbols:  | Cellulase (glycosyl hydrolase family 5)
           protein | chr3:9559742-9563070 REVERSE LENGTH=508
          Length = 508

 Score = 82.8 bits (203), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 34/80 (42%), Positives = 52/80 (65%)

Query: 10  VNDTLNTFDVPEVVTGIAKNNPSVLKMTHIQAFEAVVLELGAQNVKVLLDNHVSEPKWCC 69
           V  +  +  + + ++G    NPS++ +  I+A++ VV +LG  NV V+LDNHV++P WCC
Sbjct: 79  VRQSFQSLGLNDDISGFETKNPSMIDLPLIEAYKKVVAKLGNNNVMVILDNHVTKPGWCC 138

Query: 70  GDDDENGFFHDRHFDPEEWV 89
           G +D NGFF D  FDP  W+
Sbjct: 139 GYNDGNGFFGDTFFDPTTWI 158


>AT5G16700.1 | Symbols:  | Glycosyl hydrolase superfamily protein |
           chr5:5480763-5483045 FORWARD LENGTH=488
          Length = 488

 Score = 73.9 bits (180), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 34/81 (41%), Positives = 47/81 (58%)

Query: 10  VNDTLNTFDVPEVVTGIAKNNPSVLKMTHIQAFEAVVLELGAQNVKVLLDNHVSEPKWCC 69
           V  +  +  + E V GI  +NP +L +    AF+ VV  LG   V V+LDNH++ P WCC
Sbjct: 100 VKQSFESLKLFEDVLGIQTHNPKLLHLPLFNAFQEVVSNLGENGVMVILDNHLTTPGWCC 159

Query: 70  GDDDENGFFHDRHFDPEEWVQ 90
           GD+D + FF   HFDP  W +
Sbjct: 160 GDNDLDAFFGYPHFDPLVWAK 180


>AT5G17500.1 | Symbols:  | Glycosyl hydrolase superfamily protein |
           chr5:5767379-5769719 FORWARD LENGTH=526
          Length = 526

 Score = 68.6 bits (166), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 30/80 (37%), Positives = 46/80 (57%)

Query: 10  VNDTLNTFDVPEVVTGIAKNNPSVLKMTHIQAFEAVVLELGAQNVKVLLDNHVSEPKWCC 69
           V  +   + +   + GI  +NP ++    I  F+AVV  LG  +V V+LDNH + P WCC
Sbjct: 102 VKQSFERYGLDHELQGIYTHNPYIVNTPLINVFQAVVYSLGRHDVMVILDNHKTVPGWCC 161

Query: 70  GDDDENGFFHDRHFDPEEWV 89
            +DD + FF D  F+P+ W+
Sbjct: 162 SNDDPDAFFGDPKFNPDLWM 181