Miyakogusa Predicted Gene

Lj0g3v0266429.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0266429.1 tr|I6LNS9|I6LNS9_HEVBR Mitochondrial 50S
ribosomal protein L21 OS=Hevea brasiliensis GN=mRPL21 PE=2
,52.17,0.000000000000009,seg,NULL,gene.g20678.t1.1
         (67 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G30930.1 | Symbols: NFD1 | Ribosomal protein L21 | chr4:15050...    66   4e-12

>AT4G30930.1 | Symbols: NFD1 | Ribosomal protein L21 |
           chr4:15050170-15051630 REVERSE LENGTH=270
          Length = 270

 Score = 66.2 bits (160), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 40/77 (51%), Positives = 44/77 (57%), Gaps = 25/77 (32%)

Query: 1   MLLGSATQTIICRPTVPDAAVHAVVEEH-------------------------ELTKLRI 35
           +LLGSA+QTII RP +PDA VHAVVEEH                         ELTKLRI
Sbjct: 179 LLLGSASQTIIGRPILPDATVHAVVEEHALDEKVLIFKKKRRKNYRRTRGHRQELTKLRI 238

Query: 36  TDIQGIEKPPIVLDEKP 52
           TDIQGIEKP   +  KP
Sbjct: 239 TDIQGIEKPEPKIVHKP 255