Miyakogusa Predicted Gene

Lj0g3v0266349.4

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0266349.4 Non Chatacterized Hit- tr|F6HWY1|F6HWY1_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,59.52,2e-19,alpha/beta knot,NULL; SUBFAMILY NOT NAMED,NULL; RNA
METHYLTRANSFERASE,NULL; SpoU_methylase,tRNA/rRNA,CUFF.17563.4
         (107 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G38020.1 | Symbols:  | tRNA/rRNA methyltransferase (SpoU) fam...   126   2e-30

>AT4G38020.1 | Symbols:  | tRNA/rRNA methyltransferase (SpoU) family
           protein | chr4:17861568-17863010 FORWARD LENGTH=352
          Length = 352

 Score =  126 bits (317), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 60/102 (58%), Positives = 83/102 (81%), Gaps = 3/102 (2%)

Query: 1   MDYLIIPDKAEIPNGLVTSTASIVHVSSIVMRKLSGLQSTDSVDAIALIKIPDSVFNLDG 60
           ++ L++ ++A+IP GL + +  IV VSS+VM+KLSG+QST+SV+AIAL++IP S  +L  
Sbjct: 121 IECLLLHEEAKIPQGLESLSIRIVRVSSLVMKKLSGVQSTESVEAIALMRIPSSFTDLKD 180

Query: 61  DQN---NCYKWFPSAHRILVLDGIQDPGNLGTLLRSAVAFRW 99
           D++   +C KWFPSAHR+LVLD IQDPGNLGTL+RSA+AF W
Sbjct: 181 DKDIITDCNKWFPSAHRVLVLDSIQDPGNLGTLVRSAMAFNW 222