Miyakogusa Predicted Gene

Lj0g3v0266349.3
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0266349.3 Non Chatacterized Hit- tr|D8UGY1|D8UGY1_VOLCA
Putative uncharacterized protein OS=Volvox carteri
GN=,48.94,0.0003,alpha/beta knot,NULL; SUBFAMILY NOT NAMED,NULL; RNA
METHYLTRANSFERASE,NULL; seg,NULL; SpoU_methylase,CUFF.17563.3
         (187 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G38020.1 | Symbols:  | tRNA/rRNA methyltransferase (SpoU) fam...   223   7e-59

>AT4G38020.1 | Symbols:  | tRNA/rRNA methyltransferase (SpoU) family
           protein | chr4:17861568-17863010 FORWARD LENGTH=352
          Length = 352

 Score =  223 bits (568), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 109/164 (66%), Positives = 122/164 (74%), Gaps = 1/164 (0%)

Query: 21  NNCYKWFPSAHRILVLDGIQDPGNLGTLLRSAVAFRWDGVFLLPGCCDPFNEKALRASRG 80
            +C KWFPSAHR+LVLD IQDPGNLGTL+RSA+AF WDG FLLPGCCDP+N+KALRASRG
Sbjct: 186 TDCNKWFPSAHRVLVLDSIQDPGNLGTLVRSAMAFNWDGAFLLPGCCDPYNDKALRASRG 245

Query: 81  ASFQLPVVSGNWNHLESLKETFQMKLLAGHPEHEGLD-KRVCLLSPSFCDSLSDTPLCXX 139
           ASFQLP+VSGNWNHL+ L+  FQMKLLAGHP       K V  LS  F  SL++ PLC  
Sbjct: 246 ASFQLPIVSGNWNHLKLLENEFQMKLLAGHPATTTQKLKPVSKLSVEFAQSLAEKPLCLI 305

Query: 140 XXXXXXXXXXXXXHACELVSIAMAGEYESLNVSVAGGIFLYMLQ 183
                          C LVSI MAG++ESLNVSVAGGIFLYMLQ
Sbjct: 306 LGSEGNGLSEQARKVCVLVSIPMAGDFESLNVSVAGGIFLYMLQ 349