Miyakogusa Predicted Gene

Lj0g3v0266309.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0266309.1 tr|G7K743|G7K743_MEDTR Serine
palmitoyltransferase OS=Medicago truncatula GN=MTR_5g072020 PE=4
SV=1,87.17,0,PLP-dependent transferases,Pyridoxal phosphate-dependent
transferase, major domain; SERINE PALMITOYL,CUFF.17571.1
         (308 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G36480.2 | Symbols: ATLCB1, LCB1, EMB2779, FBR11 | long-chain...   495   e-140
AT4G36480.1 | Symbols: ATLCB1, LCB1, EMB2779, FBR11 | long-chain...   495   e-140
AT3G48780.1 | Symbols: ATSPT1, SPT1 | serine palmitoyltransferas...   105   5e-23
AT5G23670.2 | Symbols: LCB2 | long chain base2 | chr5:7981889-79...   101   5e-22
AT5G23670.1 | Symbols: LCB2 | long chain base2 | chr5:7981889-79...   101   5e-22
AT3G48790.1 | Symbols:  | Pyridoxal phosphate (PLP)-dependent tr...    84   9e-17
AT5G04620.2 | Symbols: ATBIOF, BIOF | biotin F | chr5:1327292-13...    75   5e-14
AT5G04620.1 | Symbols: ATBIOF, BIOF | biotin F | chr5:1328004-13...    56   3e-08

>AT4G36480.2 | Symbols: ATLCB1, LCB1, EMB2779, FBR11 | long-chain
           base1 | chr4:17218598-17221124 FORWARD LENGTH=482
          Length = 482

 Score =  495 bits (1274), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 229/304 (75%), Positives = 259/304 (85%)

Query: 5   MAATVVDFVNTALGWLSFAVDAPSARAVVFGVNIGGHXXXXXXXXXXXXXXXSQKSYKPP 64
           MA+ +V+  N AL W++  +++PSAR V+FGV I GH               ++KSYKPP
Sbjct: 1   MASNLVEMFNAALNWVTMILESPSARVVLFGVPIRGHFFVEGLLGVVIIILLTRKSYKPP 60

Query: 65  KRPLTNKEIDELCDEWAPESLIPSLNEEMLYEPPVLESAAGPHTIVNGKDVVNFSSANYL 124
           KRPLT +EIDELCDEW PE LIP + E+M +EPPVLESAAGPHT VNGKDVVNF+SANYL
Sbjct: 61  KRPLTEQEIDELCDEWVPEPLIPPITEDMKHEPPVLESAAGPHTTVNGKDVVNFASANYL 120

Query: 125 GLVGHQKLLDSCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDSILYSYGLS 184
           GL+GH+KLL+SCTSALEKYGVGSCGPRGFYGTIDVHLDCE RI+KFLGTPDSILYSYGLS
Sbjct: 121 GLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCETRISKFLGTPDSILYSYGLS 180

Query: 185 TMFSAIPAFSKKGDIIVADEGVHWGIQNGLHLSRSTVVYFKHNDMDSLRETLEKITIKYK 244
           TMFS IP F KKGD+IVADEGVHWGIQNGL LSRST+VYFKHNDM+SLR TLEKI  KYK
Sbjct: 181 TMFSTIPCFCKKGDVIVADEGVHWGIQNGLQLSRSTIVYFKHNDMESLRITLEKIMTKYK 240

Query: 245 RVKNLRRYIVVEAIYQNSGQIAPLDEIIKLKEKYRFRVLMDESNSFGVLGSSGRGLTEYY 304
           R KNLRRYIV EA+YQNSGQIAPLDEI+KLKEKYRFRV++DESNSFGVLG SGRGL E++
Sbjct: 241 RSKNLRRYIVAEAVYQNSGQIAPLDEIVKLKEKYRFRVILDESNSFGVLGRSGRGLAEHH 300

Query: 305 DVPV 308
            VP+
Sbjct: 301 SVPI 304


>AT4G36480.1 | Symbols: ATLCB1, LCB1, EMB2779, FBR11 | long-chain
           base1 | chr4:17218598-17221124 FORWARD LENGTH=482
          Length = 482

 Score =  495 bits (1274), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 229/304 (75%), Positives = 259/304 (85%)

Query: 5   MAATVVDFVNTALGWLSFAVDAPSARAVVFGVNIGGHXXXXXXXXXXXXXXXSQKSYKPP 64
           MA+ +V+  N AL W++  +++PSAR V+FGV I GH               ++KSYKPP
Sbjct: 1   MASNLVEMFNAALNWVTMILESPSARVVLFGVPIRGHFFVEGLLGVVIIILLTRKSYKPP 60

Query: 65  KRPLTNKEIDELCDEWAPESLIPSLNEEMLYEPPVLESAAGPHTIVNGKDVVNFSSANYL 124
           KRPLT +EIDELCDEW PE LIP + E+M +EPPVLESAAGPHT VNGKDVVNF+SANYL
Sbjct: 61  KRPLTEQEIDELCDEWVPEPLIPPITEDMKHEPPVLESAAGPHTTVNGKDVVNFASANYL 120

Query: 125 GLVGHQKLLDSCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDSILYSYGLS 184
           GL+GH+KLL+SCTSALEKYGVGSCGPRGFYGTIDVHLDCE RI+KFLGTPDSILYSYGLS
Sbjct: 121 GLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCETRISKFLGTPDSILYSYGLS 180

Query: 185 TMFSAIPAFSKKGDIIVADEGVHWGIQNGLHLSRSTVVYFKHNDMDSLRETLEKITIKYK 244
           TMFS IP F KKGD+IVADEGVHWGIQNGL LSRST+VYFKHNDM+SLR TLEKI  KYK
Sbjct: 181 TMFSTIPCFCKKGDVIVADEGVHWGIQNGLQLSRSTIVYFKHNDMESLRITLEKIMTKYK 240

Query: 245 RVKNLRRYIVVEAIYQNSGQIAPLDEIIKLKEKYRFRVLMDESNSFGVLGSSGRGLTEYY 304
           R KNLRRYIV EA+YQNSGQIAPLDEI+KLKEKYRFRV++DESNSFGVLG SGRGL E++
Sbjct: 241 RSKNLRRYIVAEAVYQNSGQIAPLDEIVKLKEKYRFRVILDESNSFGVLGRSGRGLAEHH 300

Query: 305 DVPV 308
            VP+
Sbjct: 301 SVPI 304


>AT3G48780.1 | Symbols: ATSPT1, SPT1 | serine palmitoyltransferase 1
           | chr3:18089346-18092276 FORWARD LENGTH=489
          Length = 489

 Score =  105 bits (261), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 67/199 (33%), Positives = 103/199 (51%), Gaps = 10/199 (5%)

Query: 115 VVNFSSANYLGLVGHQKLLDSCT----SALEKYGVGSCGPRGFYGTIDVHLDCEARIAKF 170
            +N  S NYLG        + CT     +L+K+   +C  R   GT  VH + E  +AK+
Sbjct: 102 CLNLGSYNYLGF---GSFDEYCTPRVIESLKKFSASTCSSRVDAGTTSVHAELEDCVAKY 158

Query: 171 LGTPDSILYSYGLSTMFSAIPAFSKKGDIIVADEGVHWGIQNGLHLSRSTVVYFKHNDMD 230
           +G P ++++  G +T  + IP    KG +I++D   H  I NG   S +T+  F+HN   
Sbjct: 159 VGQPAAVIFGMGYATNSAIIPVLIGKGGLIISDSLNHTSIVNGARGSGATIRVFQHNTPG 218

Query: 231 SLRETL-EKITIKYKRVKNLRRYI--VVEAIYQNSGQIAPLDEIIKLKEKYRFRVLMDES 287
            L + L E+I     R     + I  VVE IY   G+I  L EI+ + +KY+  V +DE+
Sbjct: 219 HLEKVLKEQIAEGQPRTHRPWKKIIVVVEGIYSMEGEICHLPEIVSICKKYKAYVYLDEA 278

Query: 288 NSFGVLGSSGRGLTEYYDV 306
           +S G +G +GRG+ E   V
Sbjct: 279 HSIGAIGKTGRGVCELLGV 297


>AT5G23670.2 | Symbols: LCB2 | long chain base2 |
           chr5:7981889-7985037 FORWARD LENGTH=489
          Length = 489

 Score =  101 bits (252), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 64/199 (32%), Positives = 101/199 (50%), Gaps = 10/199 (5%)

Query: 115 VVNFSSANYLGLVGHQKLLDSCT----SALEKYGVGSCGPRGFYGTIDVHLDCEARIAKF 170
            +N  S NYLG        + CT     +L+K+   +C  R   GT  VH + E  + +F
Sbjct: 102 CLNLGSYNYLGFGSFD---EYCTPRVIESLKKFSASTCSSRVDAGTTSVHAELEECVTRF 158

Query: 171 LGTPDSILYSYGLSTMFSAIPAFSKKGDIIVADEGVHWGIQNGLHLSRSTVVYFKHNDMD 230
           +G P ++++  G +T  + IP    KG +I++D   H  I NG   S +T+  F+HN   
Sbjct: 159 VGKPAAVVFGMGYATNSAIIPVLIGKGGLIISDSLNHSSIVNGARGSGATIRVFQHNTPS 218

Query: 231 SLRETL-EKITIKYKRVKNLRRYI--VVEAIYQNSGQIAPLDEIIKLKEKYRFRVLMDES 287
            L   L E+I     R     + I  VVE IY   G+I  L E++ + +KY+  V +DE+
Sbjct: 219 HLERVLREQIAEGQPRTHRPWKKIIVVVEGIYSMEGEICHLPEVVAICKKYKAYVYLDEA 278

Query: 288 NSFGVLGSSGRGLTEYYDV 306
           +S G +G +G+G+ E   V
Sbjct: 279 HSIGAIGKTGKGICELLGV 297


>AT5G23670.1 | Symbols: LCB2 | long chain base2 |
           chr5:7981889-7985037 FORWARD LENGTH=489
          Length = 489

 Score =  101 bits (252), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 64/199 (32%), Positives = 101/199 (50%), Gaps = 10/199 (5%)

Query: 115 VVNFSSANYLGLVGHQKLLDSCT----SALEKYGVGSCGPRGFYGTIDVHLDCEARIAKF 170
            +N  S NYLG        + CT     +L+K+   +C  R   GT  VH + E  + +F
Sbjct: 102 CLNLGSYNYLGFGSFD---EYCTPRVIESLKKFSASTCSSRVDAGTTSVHAELEECVTRF 158

Query: 171 LGTPDSILYSYGLSTMFSAIPAFSKKGDIIVADEGVHWGIQNGLHLSRSTVVYFKHNDMD 230
           +G P ++++  G +T  + IP    KG +I++D   H  I NG   S +T+  F+HN   
Sbjct: 159 VGKPAAVVFGMGYATNSAIIPVLIGKGGLIISDSLNHSSIVNGARGSGATIRVFQHNTPS 218

Query: 231 SLRETL-EKITIKYKRVKNLRRYI--VVEAIYQNSGQIAPLDEIIKLKEKYRFRVLMDES 287
            L   L E+I     R     + I  VVE IY   G+I  L E++ + +KY+  V +DE+
Sbjct: 219 HLERVLREQIAEGQPRTHRPWKKIIVVVEGIYSMEGEICHLPEVVAICKKYKAYVYLDEA 278

Query: 288 NSFGVLGSSGRGLTEYYDV 306
           +S G +G +G+G+ E   V
Sbjct: 279 HSIGAIGKTGKGICELLGV 297


>AT3G48790.1 | Symbols:  | Pyridoxal phosphate (PLP)-dependent
           transferases superfamily protein |
           chr3:18093404-18095181 FORWARD LENGTH=350
          Length = 350

 Score = 84.3 bits (207), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 50/153 (32%), Positives = 83/153 (54%), Gaps = 6/153 (3%)

Query: 155 GTIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPAFSKKGDIIVADEGVHWGIQNGL 214
           GT  VH + E  +AKF+G P ++++  G  T  + I     KG +I++D   H  I NG 
Sbjct: 7   GTTAVHGELEECVAKFVGKPAAVVFGMGYLTNSAIISVLIGKGGLIISDSLNHTSIINGA 66

Query: 215 HLSRSTVVYFKHNDM-DSLRETLEKITIKYKRVKNLRRYIVVEAIYQNSGQIAPLDEIIK 273
             S +T+  F+HN + + + E   +    +K++      +VVE IY   G+I  L EI+ 
Sbjct: 67  RGSGATIRVFQHNILKEHIIEGQPRTHRPWKKI-----IVVVEGIYSMEGEICDLPEIVS 121

Query: 274 LKEKYRFRVLMDESNSFGVLGSSGRGLTEYYDV 306
           +  +Y+  V +DE++S G +G +GRG+ E   V
Sbjct: 122 VCSEYKAYVYLDEAHSIGAIGKTGRGVCELLGV 154


>AT5G04620.2 | Symbols: ATBIOF, BIOF | biotin F |
           chr5:1327292-1329934 FORWARD LENGTH=476
          Length = 476

 Score = 75.1 bits (183), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 56/238 (23%), Positives = 107/238 (44%), Gaps = 30/238 (12%)

Query: 87  PSLNEEMLYEPPVLESAAGPHTIVNGKDVVNFSSANYLGLVGHQKLLDSCTSALEKYGVG 146
           PS  EE+     + E   G       K ++ FS  +YLGL  H  + ++  +A+++YG+G
Sbjct: 81  PSNGEEIFSGDALAECRKGRF-----KKLLLFSGNDYLGLSSHPTISNAAANAVKEYGMG 135

Query: 147 SCGPRGFYGTIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPAFSKKGDIIVA---- 202
             G     G    H   E+ +A+     D ++   G +   +A+ A      ++ A    
Sbjct: 136 PKGSALICGYTTYHRLLESSLAQLKKKEDCLVCPTGFAANMAAMVAIGSVASLLAASGKP 195

Query: 203 ----------DEGVHWGIQNGLHLSRST----VVYFKHNDMDSLRETLEKITIKYKRVKN 248
                     D   H  I +G+ L+       V  ++H DM  L   L    +K      
Sbjct: 196 LKNEKVAIFSDALNHASIIDGVRLAERQGNVEVFVYRHCDMYHLNSLLSNCKMK------ 249

Query: 249 LRRYIVVEAIYQNSGQIAPLDEIIKLKEKYRFRVLMDESNSFGVLGSSGRGLTEYYDV 306
            R+ +V ++++   G  AP++E+ +L++KY F +++D+++   V G +G G+ E ++ 
Sbjct: 250 -RKVVVTDSLFSMDGDFAPMEELSQLRKKYGFLLVIDDAHGTFVCGENGGGVAEEFNC 306


>AT5G04620.1 | Symbols: ATBIOF, BIOF | biotin F |
           chr5:1328004-1329934 FORWARD LENGTH=343
          Length = 343

 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 47/191 (24%), Positives = 87/191 (45%), Gaps = 27/191 (14%)

Query: 120 SANYLGLVGHQKLLDSCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDSILY 179
           SA   G   + +LL+S  + L+K       P GF   +       A +A  +G+  S+L 
Sbjct: 6   SALICGYTTYHRLLESSLAQLKKKEDCLVCPTGFAANM------AAMVA--IGSVASLLA 57

Query: 180 SYGLSTMFSAIPAFSKKGDIIVADEGVHWGIQNGLHLSRST----VVYFKHNDMDSLRET 235
           + G       +  FS        D   H  I +G+ L+       V  ++H DM  L   
Sbjct: 58  ASGKPLKNEKVAIFS--------DALNHASIIDGVRLAERQGNVEVFVYRHCDMYHLNSL 109

Query: 236 LEKITIKYKRVKNLRRYIVVEAIYQNSGQIAPLDEIIKLKEKYRFRVLMDESNSFGVLGS 295
           L    +K       R+ +V ++++   G  AP++E+ +L++KY F +++D+++   V G 
Sbjct: 110 LSNCKMK-------RKVVVTDSLFSMDGDFAPMEELSQLRKKYGFLLVIDDAHGTFVCGE 162

Query: 296 SGRGLTEYYDV 306
           +G G+ E ++ 
Sbjct: 163 NGGGVAEEFNC 173