Miyakogusa Predicted Gene
- Lj0g3v0266149.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0266149.1 Non Chatacterized Hit- tr|B8A712|B8A712_ORYSI
Putative uncharacterized protein OS=Oryza sativa
subsp,54.39,2e-19,Ubiquitin homologues,Ubiquitin; Ubiquitin-like,NULL;
PREDICTED: SIMILAR TO UBIQUITIN,NULL; UBIQUITIN,CUFF.17547.1
(135 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G06599.1 | Symbols: | ubiquitin family protein | chr4:366607... 133 3e-32
>AT4G06599.1 | Symbols: | ubiquitin family protein |
chr4:3666079-3667495 REVERSE LENGTH=340
Length = 340
Score = 133 bits (335), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 74/120 (61%), Positives = 90/120 (75%), Gaps = 6/120 (5%)
Query: 21 ASNLREEEMPLKVKWSGKDYTVRVCGDDTIVELKRRICELTNVLPIRQKFLYPKLGSKLN 80
S L EEE+ L VKW+GK+YTVR+C DD++ ELKRRIC LT VLP RQK LYPK+G+KL+
Sbjct: 16 VSPLTEEELTLTVKWNGKEYTVRICADDSVAELKRRICLLTTVLPKRQKLLYPKIGNKLS 75
Query: 81 DHSLNSLSIP-----KFTMIGTNEEDFLIVDPVEAPEIIDDLELPQEEAIDIKDMEVNKH 135
D SL SI K TMIGT E+D +IVD E+PEI+DD EL +EEA+D+KD EVNK
Sbjct: 76 DDSLLLSSISFKPSLKMTMIGTVEDD-IIVDQAESPEIVDDFELGKEEAVDVKDKEVNKQ 134