Miyakogusa Predicted Gene

Lj0g3v0266149.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0266149.1 Non Chatacterized Hit- tr|B8A712|B8A712_ORYSI
Putative uncharacterized protein OS=Oryza sativa
subsp,54.39,2e-19,Ubiquitin homologues,Ubiquitin; Ubiquitin-like,NULL;
PREDICTED: SIMILAR TO UBIQUITIN,NULL; UBIQUITIN,CUFF.17547.1
         (135 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G06599.1 | Symbols:  | ubiquitin family protein | chr4:366607...   133   3e-32

>AT4G06599.1 | Symbols:  | ubiquitin family protein |
           chr4:3666079-3667495 REVERSE LENGTH=340
          Length = 340

 Score =  133 bits (335), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 74/120 (61%), Positives = 90/120 (75%), Gaps = 6/120 (5%)

Query: 21  ASNLREEEMPLKVKWSGKDYTVRVCGDDTIVELKRRICELTNVLPIRQKFLYPKLGSKLN 80
            S L EEE+ L VKW+GK+YTVR+C DD++ ELKRRIC LT VLP RQK LYPK+G+KL+
Sbjct: 16  VSPLTEEELTLTVKWNGKEYTVRICADDSVAELKRRICLLTTVLPKRQKLLYPKIGNKLS 75

Query: 81  DHSLNSLSIP-----KFTMIGTNEEDFLIVDPVEAPEIIDDLELPQEEAIDIKDMEVNKH 135
           D SL   SI      K TMIGT E+D +IVD  E+PEI+DD EL +EEA+D+KD EVNK 
Sbjct: 76  DDSLLLSSISFKPSLKMTMIGTVEDD-IIVDQAESPEIVDDFELGKEEAVDVKDKEVNKQ 134