Miyakogusa Predicted Gene

Lj0g3v0266139.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0266139.1 Non Chatacterized Hit- tr|I1JGV4|I1JGV4_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.29324
PE,43.93,0.00000000006,seg,NULL; VQ,VQ,CUFF.17545.1
         (276 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G78310.1 | Symbols:  | VQ motif-containing protein | chr1:294...    67   1e-11

>AT1G78310.1 | Symbols:  | VQ motif-containing protein |
           chr1:29464003-29464938 REVERSE LENGTH=311
          Length = 311

 Score = 67.0 bits (162), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 63/196 (32%), Positives = 70/196 (35%), Gaps = 29/196 (14%)

Query: 16  RDHYLRHLNKLXXXXXXXXXXXXXTFHNNLXXXXXXXXXXXXXXXXXXXXXXXXVYNINK 75
           RDHYLR LNKL                 N                         VYNINK
Sbjct: 29  RDHYLRQLNKLSHKISKPTNSSSSVSVAN-REIDLPPPPPLQINQGNLHQHQPPVYNINK 87

Query: 76  NDFRDVVQKLTGSPAHDRISTXXXXXXXXXX-----------------XTNRPPQLMNSA 118
           NDFRDVVQKLTGSPAH+RIS                              NRPP L+N A
Sbjct: 88  NDFRDVVQKLTGSPAHERISAPPQQPIHHPKPQQSSRLHRIRPPPLVHVINRPPGLLNDA 147

Query: 119 MPRXXXXXXXXXXXXXXXXXXXXXXXXXXRXXXXXXXXXXXXTVHAPAESPISAYMRDLQ 178
           +                            R             VHA AESP+S+YMR LQ
Sbjct: 148 L---------IPQGSHHMNQNWTGVGFNLRPTAPLSPLPPLPPVHAAAESPVSSYMRYLQ 198

Query: 179 FLLPTMDS--KNFSGF 192
             +  +DS  K FSG 
Sbjct: 199 NSMFAIDSNRKEFSGL 214