Miyakogusa Predicted Gene

Lj0g3v0265709.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0265709.1 tr|G7ILL5|G7ILL5_MEDTR 26S proteasome non-ATPase
regulatory subunit OS=Medicago truncatula GN=MTR_2g,96.44,0,JAB1/MPN
domain,NULL; no description,NULL; 26S PROTEASOME NON-ATPASE REGULATORY
SUBUNIT 14,NULL; EUK,NODE_14050_length_1370_cov_294.707306.path2.1
         (309 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G23540.1 | Symbols:  | Mov34/MPN/PAD-1 family protein | chr5:...   547   e-156
AT5G23540.2 | Symbols:  | Mov34/MPN/PAD-1 family protein | chr5:...   473   e-133
AT1G71230.1 | Symbols: CSN5B, CSN5, AJH2 | COP9-signalosome 5B |...   119   4e-27
AT1G22920.1 | Symbols: CSN5A, JAB1, AJH1 | COP9 signalosome 5A |...   114   6e-26
AT1G22920.2 | Symbols: CSN5A, JAB1, AJH1 | COP9 signalosome 5A |...   114   7e-26
AT1G10600.1 | Symbols: AMSH2 | associated molecule with the SH3 ...    54   2e-07
AT1G10600.2 | Symbols: AMSH2 | associated molecule with the SH3 ...    51   1e-06

>AT5G23540.1 | Symbols:  | Mov34/MPN/PAD-1 family protein |
           chr5:7937772-7939339 FORWARD LENGTH=308
          Length = 308

 Score =  547 bits (1409), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 271/309 (87%), Positives = 274/309 (88%), Gaps = 1/309 (0%)

Query: 1   MERLQRMFXXXXXXLGHPPPDSPTLDSSEQVYISSLALLKMLKHGRAGVPMEVMGLMLGE 60
           MERLQR+F      LGH  PDSPTLD+SEQVYISSLALLKMLKHGRAGVPMEVMGLMLGE
Sbjct: 1   MERLQRIFGAGGG-LGHASPDSPTLDTSEQVYISSLALLKMLKHGRAGVPMEVMGLMLGE 59

Query: 61  FVDEYTVRVVDVFAMPQSGTGVSVEAVDHVFQTNMLDMLKQTGRPEMVVGWYHSHPGFGC 120
           FVDEYTVRVVDVFAMPQSGTGVSVEAVDHVFQTNMLDMLKQTGRPEMVVGWYHSHPGFGC
Sbjct: 60  FVDEYTVRVVDVFAMPQSGTGVSVEAVDHVFQTNMLDMLKQTGRPEMVVGWYHSHPGFGC 119

Query: 121 WLSGVDINTQQSFEALNQRAVAGVVDPIQRVKGKGVIDAFRLIKPQTMMLGQEPRQTTSN 180
           WLSGVDINTQQSFEALNQRAVA VVDPIQ VKGK VIDAFR I PQT+MLGQEPRQTTSN
Sbjct: 120 WLSGVDINTQQSFEALNQRAVAVVVDPIQSVKGKVVIDAFRSINPQTIMLGQEPRQTTSN 179

Query: 181 LGHLNKPSIQALIHGLNRHYYSIAINYRXXXXXXXXXXXXXXXXSTDGLTLHSFDTHSKT 240
           LGHLNKPSIQALIHGLNRHYYSIAINYR                 TDGLTL  FDTHSKT
Sbjct: 180 LGHLNKPSIQALIHGLNRHYYSIAINYRKNELEEKMLLNLHKKKWTDGLTLRRFDTHSKT 239

Query: 241 NEQTVQEMLSLAVKYNKAVQEEDELSPEKLAIANVGRQDAKKHLEEHVSNLMSSNIVQTL 300
           NEQTVQEMLSLA KYNKAVQEEDELSPEKLAI NVGRQDAKKHLEEHVSNLMSSNIVQTL
Sbjct: 240 NEQTVQEMLSLAAKYNKAVQEEDELSPEKLAIVNVGRQDAKKHLEEHVSNLMSSNIVQTL 299

Query: 301 GMMLDTVVF 309
           G MLDTVVF
Sbjct: 300 GTMLDTVVF 308


>AT5G23540.2 | Symbols:  | Mov34/MPN/PAD-1 family protein |
           chr5:7938109-7939339 FORWARD LENGTH=259
          Length = 259

 Score =  473 bits (1216), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 231/259 (89%), Positives = 232/259 (89%)

Query: 51  MEVMGLMLGEFVDEYTVRVVDVFAMPQSGTGVSVEAVDHVFQTNMLDMLKQTGRPEMVVG 110
           MEVMGLMLGEFVDEYTVRVVDVFAMPQSGTGVSVEAVDHVFQTNMLDMLKQTGRPEMVVG
Sbjct: 1   MEVMGLMLGEFVDEYTVRVVDVFAMPQSGTGVSVEAVDHVFQTNMLDMLKQTGRPEMVVG 60

Query: 111 WYHSHPGFGCWLSGVDINTQQSFEALNQRAVAGVVDPIQRVKGKGVIDAFRLIKPQTMML 170
           WYHSHPGFGCWLSGVDINTQQSFEALNQRAVA VVDPIQ VKGK VIDAFR I PQT+ML
Sbjct: 61  WYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVKGKVVIDAFRSINPQTIML 120

Query: 171 GQEPRQTTSNLGHLNKPSIQALIHGLNRHYYSIAINYRXXXXXXXXXXXXXXXXSTDGLT 230
           GQEPRQTTSNLGHLNKPSIQALIHGLNRHYYSIAINYR                 TDGLT
Sbjct: 121 GQEPRQTTSNLGHLNKPSIQALIHGLNRHYYSIAINYRKNELEEKMLLNLHKKKWTDGLT 180

Query: 231 LHSFDTHSKTNEQTVQEMLSLAVKYNKAVQEEDELSPEKLAIANVGRQDAKKHLEEHVSN 290
           L  FDTHSKTNEQTVQEMLSLA KYNKAVQEEDELSPEKLAI NVGRQDAKKHLEEHVSN
Sbjct: 181 LRRFDTHSKTNEQTVQEMLSLAAKYNKAVQEEDELSPEKLAIVNVGRQDAKKHLEEHVSN 240

Query: 291 LMSSNIVQTLGMMLDTVVF 309
           LMSSNIVQTLG MLDTVVF
Sbjct: 241 LMSSNIVQTLGTMLDTVVF 259


>AT1G71230.1 | Symbols: CSN5B, CSN5, AJH2 | COP9-signalosome 5B |
           chr1:26852560-26854255 FORWARD LENGTH=358
          Length = 358

 Score =  119 bits (297), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 67/141 (47%), Positives = 89/141 (63%), Gaps = 14/141 (9%)

Query: 29  EQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDEYTVRVVDVFAMPQSGTGVSVEAVD 88
           ++V IS+LALLKM+ H R+G  +E+MGLM G+  D  T+ V+D FA+P  GT   V A D
Sbjct: 57  KRVKISALALLKMVVHARSGGTIEIMGLMQGK-TDGDTIIVMDAFALPVEGTETRVNAQD 115

Query: 89  HVF-------QTNMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAV 141
             +       QTN L      GR E VVGWYHSHPG+GCWLSG+D++TQ+  +   +  +
Sbjct: 116 DAYEYMVEYSQTNKL-----AGRLENVVGWYHSHPGYGCWLSGIDVSTQRLNQQHQEPFL 170

Query: 142 AGVVDPIQRVK-GKGVIDAFR 161
           A V+DP + V  GK  I AFR
Sbjct: 171 AVVIDPTRTVSAGKVEIGAFR 191


>AT1G22920.1 | Symbols: CSN5A, JAB1, AJH1 | COP9 signalosome 5A |
           chr1:8109882-8111895 REVERSE LENGTH=357
          Length = 357

 Score =  114 bits (286), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 62/136 (45%), Positives = 86/136 (63%), Gaps = 4/136 (2%)

Query: 29  EQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDEYTVRVVDVFAMPQSGTGVSVEAVD 88
           ++V+IS+LALLKM+ H R+G  +E+MGLM G+   + T+ V+D FA+P  GT   V A  
Sbjct: 57  KRVHISALALLKMVVHARSGGTIEIMGLMQGKTEGD-TIIVMDAFALPVEGTETRVNAQS 115

Query: 89  HVFQ--TNMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAGVVD 146
             ++         K  GR E VVGWYHSHPG+GCWLSG+D++TQ   +   +  +A V+D
Sbjct: 116 DAYEYMVEYSQTSKLAGRLENVVGWYHSHPGYGCWLSGIDVSTQMLNQQYQEPFLAVVID 175

Query: 147 PIQRVK-GKGVIDAFR 161
           P + V  GK  I AFR
Sbjct: 176 PTRTVSAGKVEIGAFR 191


>AT1G22920.2 | Symbols: CSN5A, JAB1, AJH1 | COP9 signalosome 5A |
           chr1:8109998-8111895 REVERSE LENGTH=351
          Length = 351

 Score =  114 bits (286), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 62/136 (45%), Positives = 86/136 (63%), Gaps = 4/136 (2%)

Query: 29  EQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDEYTVRVVDVFAMPQSGTGVSVEAVD 88
           ++V+IS+LALLKM+ H R+G  +E+MGLM G+   + T+ V+D FA+P  GT   V A  
Sbjct: 57  KRVHISALALLKMVVHARSGGTIEIMGLMQGKTEGD-TIIVMDAFALPVEGTETRVNAQS 115

Query: 89  HVFQ--TNMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAGVVD 146
             ++         K  GR E VVGWYHSHPG+GCWLSG+D++TQ   +   +  +A V+D
Sbjct: 116 DAYEYMVEYSQTSKLAGRLENVVGWYHSHPGYGCWLSGIDVSTQMLNQQYQEPFLAVVID 175

Query: 147 PIQRVK-GKGVIDAFR 161
           P + V  GK  I AFR
Sbjct: 176 PTRTVSAGKVEIGAFR 191


>AT1G10600.1 | Symbols: AMSH2 | associated molecule with the SH3
           domain of STAM 2 | chr1:3503765-3505190 FORWARD
           LENGTH=223
          Length = 223

 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 55/118 (46%), Gaps = 9/118 (7%)

Query: 51  MEVMGLMLGEFVDEYTVRVVDVFAMPQSGTGVSVEAVDHVFQTNMLDMLKQTGRPEMVVG 110
           +E  G  L  F++     V  +    Q  T  S +A++ V   ++     Q  R    VG
Sbjct: 71  LETCG-TLAAFLERGIFYVTTLIIPKQESTSNSCQAMNEVEVFSI-----QNERELYPVG 124

Query: 111 WYHSHPGFGCWLSGVDINTQQSFEALNQRAVAGVVDPIQRVKGKGVIDAFRLIKPQTM 168
           W H+HP  GC++S VD++T  S++ +   A A VV P    K  G+   F+L  P  M
Sbjct: 125 WIHTHPSQGCFMSSVDLHTHYSYQVMVPEAFAIVVAPTDSSKSYGI---FKLTDPGGM 179


>AT1G10600.2 | Symbols: AMSH2 | associated molecule with the SH3
           domain of STAM 2 | chr1:3503907-3505190 FORWARD
           LENGTH=166
          Length = 166

 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 36/68 (52%), Gaps = 3/68 (4%)

Query: 101 QTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAGVVDPIQRVKGKGVIDAF 160
           Q  R    VGW H+HP  GC++S VD++T  S++ +   A A VV P    K  G+   F
Sbjct: 58  QNERELYPVGWIHTHPSQGCFMSSVDLHTHYSYQVMVPEAFAIVVAPTDSSKSYGI---F 114

Query: 161 RLIKPQTM 168
           +L  P  M
Sbjct: 115 KLTDPGGM 122