Miyakogusa Predicted Gene
- Lj0g3v0265619.2
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0265619.2 Non Chatacterized Hit- tr|A2XVM7|A2XVM7_ORYSI
Putative uncharacterized protein OS=Oryza sativa
subsp,23.31,0.00000000002,CRM,RNA-binding, CRM domain; SUBFAMILY NOT
NAMED,NULL; FAMILY NOT NAMED,NULL; YhbY-like,RNA-binding,,CUFF.17523.2
(692 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G20020.1 | Symbols: CAF1, ATCAF1 | RNA-binding CRS1 / YhbY (C... 514 e-146
AT1G23400.1 | Symbols: CAF2, ATCAF2 | RNA-binding CRS1 / YhbY (C... 383 e-106
AT5G54890.1 | Symbols: | RNA-binding CRS1 / YhbY (CRM) domain-c... 263 3e-70
AT4G31010.1 | Symbols: | RNA-binding CRS1 / YhbY (CRM) domain-c... 259 6e-69
AT4G31010.2 | Symbols: | RNA-binding CRS1 / YhbY (CRM) domain-c... 179 5e-45
AT3G01370.1 | Symbols: ATCFM2, CFM2 | CRM family member 2 | chr3... 63 8e-10
AT3G18390.1 | Symbols: EMB1865 | CRS1 / YhbY (CRM) domain-contai... 54 5e-07
AT3G23070.1 | Symbols: ATCFM3A, CFM3A | CRM family member 3A | c... 52 1e-06
AT4G29750.1 | Symbols: | CRS1 / YhbY (CRM) domain-containing pr... 52 1e-06
>AT2G20020.1 | Symbols: CAF1, ATCAF1 | RNA-binding CRS1 / YhbY (CRM)
domain-containing protein | chr2:8644464-8647090 FORWARD
LENGTH=701
Length = 701
Score = 514 bits (1324), Expect = e-146, Method: Compositional matrix adjust.
Identities = 258/484 (53%), Positives = 335/484 (69%), Gaps = 17/484 (3%)
Query: 4 TVKVPFPFPITDPN--PTRQ-RPSTEVHFSRWNNALAVKLQERRRPIQEIEVEIRRTRRF 60
++K+ PFPI P+ P R +E+ FSRW NA A + ++RRR +E+E EIRR RRF
Sbjct: 2 SLKLNTPFPIFAPSLFPNHNPRAPSEIRFSRWGNANAERFEQRRRSQEELEAEIRRDRRF 61
Query: 61 DSAENIANXXXXXXXXXXXXXXXXXXXFKSVGTPSTPSRXXXXXXXXXXXXXXXXXXXXX 120
D+A I + F+S GTPS PS
Sbjct: 62 DAATKIVHTHDSEAAAAEPKTSP----FRSRGTPSLPSARSIPGRRSKYSKPDSGPNRPK 117
Query: 121 XXXFRFNR--FLPGPSDVRIGEDGVSYVVDGAPFEFRYSYTETPAEKPVEIREPV-APFG 177
+ L +V++ EDG++YV++GAPFEF+YSYTETP KP+++REP APFG
Sbjct: 118 NKPRVPDSPPQLDAKPEVKLSEDGLTYVINGAPFEFKYSYTETPKVKPLKLREPAYAPFG 177
Query: 178 PDTVPRPWTGRNPLPPGKLKSFKVFGKLVLPPADKKGTEPVQSPGRCLEELGSRYVEYRE 237
P T+ RPWTGR PLP + K+ + F LPP KKG +PVQ PG +G RYV +E
Sbjct: 178 PTTMGRPWTGRAPLPQSQ-KTPREFDSFRLPPVGKKGLKPVQKPGPFRPGVGPRYVYSKE 236
Query: 238 EVMGEPLTQDEINDLVMRTRKSPSHLSIGRDGLTHNMLENVHTHWMRQRVCQIKCRGVCT 297
E++GEPLT++E+ +LV K+ L++GRDGLTHNML N+H W R+RVC+IKC+GVCT
Sbjct: 237 EILGEPLTKEEVRELVTSCLKTTRQLNMGRDGLTHNMLNNIHDLWKRRRVCKIKCKGVCT 296
Query: 298 VDMDNVCHQLEERTGGKIIYRKGGTVYLFRGRNYDYRTRPRFPLMLWKPVSPVYPRLVKQ 357
VDMDNVC QLEE+ GGK+IYR+GG ++LFRGRNY++RTRPRFPLMLWKPV+PVYPRL++Q
Sbjct: 297 VDMDNVCEQLEEKIGGKVIYRRGGVLFLFRGRNYNHRTRPRFPLMLWKPVAPVYPRLIQQ 356
Query: 358 VPEGLTLEKATEMRQKGSNLIPICKLGKNGVYCDLVKNVREAFEVCDLVRINCEGLTASD 417
VPEGLT ++AT MR+KG L+PICKLGKNGVYCDLVKNV+EAFEVC+LVRI+C+G+ SD
Sbjct: 357 VPEGLTRQEATNMRRKGRELMPICKLGKNGVYCDLVKNVKEAFEVCELVRIDCQGMKGSD 416
Query: 418 YRRIGAKLKDLVPCVLLSFENKHILIWRGLNWRSTFLSND--GEEVNKINVDSEHSNTLP 475
+R+IGAKLKDLVPCVL+SFEN+ ILIWRG W+S+ + D G+ + I VD+ LP
Sbjct: 417 FRKIGAKLKDLVPCVLVSFENEQILIWRGREWKSSLTTPDKKGDILEDIEVDT----ALP 472
Query: 476 SDEQ 479
D++
Sbjct: 473 EDDE 476
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 51/86 (59%), Gaps = 4/86 (4%)
Query: 593 VSQPSSSATLLLLEQAVKKGVALVLDEESLDADHIYQTTMAFAKSAPPEPVFK--LPRKV 650
+S+ S L+L++QAV+ G ALVLD LDAD ++ +AF+ A P PVF+ L ++
Sbjct: 557 ISKQSIERVLILMKQAVESGTALVLDAADLDADTVFSKAVAFSSVASPGPVFQHGLRKQP 616
Query: 651 VVQKCDNQE--GSTLETKGITTVMMK 674
V+K ++QE LE K V+ +
Sbjct: 617 TVKKQESQEFGYGDLEAKSSNVVVSR 642
>AT1G23400.1 | Symbols: CAF2, ATCAF2 | RNA-binding CRS1 / YhbY (CRM)
domain-containing protein | chr1:8312199-8314740 REVERSE
LENGTH=564
Length = 564
Score = 383 bits (983), Expect = e-106, Method: Compositional matrix adjust.
Identities = 184/326 (56%), Positives = 238/326 (73%), Gaps = 2/326 (0%)
Query: 132 GPSDVRIGEDGVSYVVDGAPFEFRYSYTETPAEKPVEIREPV-APFGPDTVPRPWTGRNP 190
G + IG+ GVSY + GAPFEF++SY+ETP KPV IREP PF P T+PRPWTG+ P
Sbjct: 91 GDRTILIGDSGVSYQLPGAPFEFQFSYSETPKVKPVGIREPAFMPFAPPTMPRPWTGKAP 150
Query: 191 LPPGKLKSFKVFGKLVLPPADKKGTEPVQSPGRCLEELGSRYVEYREEVMGEPLTQDEIN 250
L K +F PPA K G + V+ PG + REEV+GEPL + E
Sbjct: 151 LK-KSKKKIPLFDSFNPPPAGKSGVKYVEMPGPLPFGRYPKEGMNREEVLGEPLKRWEKG 209
Query: 251 DLVMRTRKSPSHLSIGRDGLTHNMLENVHTHWMRQRVCQIKCRGVCTVDMDNVCHQLEER 310
L+ +++GRDG THNMLE +H+HW R+RVC+++C+GV TVDM+NVC LEE+
Sbjct: 210 MLIKPHMHDNRQVNLGRDGFTHNMLELIHSHWKRRRVCKVRCKGVPTVDMNNVCRVLEEK 269
Query: 311 TGGKIIYRKGGTVYLFRGRNYDYRTRPRFPLMLWKPVSPVYPRLVKQVPEGLTLEKATEM 370
TGG+II+R GG VYLFRGRNY+YRTRP++PLMLWKP +PVYP+L+++VPEGLT E+A E
Sbjct: 270 TGGEIIHRVGGVVYLFRGRNYNYRTRPQYPLMLWKPAAPVYPKLIQEVPEGLTKEEAHEF 329
Query: 371 RQKGSNLIPICKLGKNGVYCDLVKNVREAFEVCDLVRINCEGLTASDYRRIGAKLKDLVP 430
R KG +L PICKL KNGVY LVK+VR+AFE+ LV+++C GL SDY++IGAKLK+LVP
Sbjct: 330 RVKGKSLRPICKLSKNGVYVSLVKDVRDAFELSSLVKVDCPGLEPSDYKKIGAKLKELVP 389
Query: 431 CVLLSFENKHILIWRGLNWRSTFLSN 456
CVLLSF+++ IL+WRG W+S F+ N
Sbjct: 390 CVLLSFDDEQILMWRGREWKSRFVDN 415
>AT5G54890.1 | Symbols: | RNA-binding CRS1 / YhbY (CRM)
domain-containing protein | chr5:22293346-22294909
FORWARD LENGTH=358
Length = 358
Score = 263 bits (672), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 133/306 (43%), Positives = 191/306 (62%), Gaps = 36/306 (11%)
Query: 146 VVDGAPFEFRYSYTET-PAEKPVEIREP--VAPFGPDTVPRPWTGRNPLPPGKLKSFKVF 202
V+ PF+FRYSY+ET P +P+ REP +PFGP + R WTG L
Sbjct: 73 VISDLPFDFRYSYSETNPEIEPIGFREPKRFSPFGPGRLDRKWTGTTALAS--------- 123
Query: 203 GKLVLPPADKKGTEPVQSPGRCLEELGSRYVEYREEVMGEPLTQDEINDLVMRTRKSPS- 261
P D+ S++VE R V+GE LT+DE+ +L+ R R S
Sbjct: 124 -----PEIDQ-----------------SQWVEERARVLGETLTEDEVTELIERYRHSDCT 161
Query: 262 -HLSIGRDGLTHNMLENVHTHWMRQRVCQIKCRGVCTVDMDNVCHQLEERTGGKIIYRKG 320
+++G+ G+THNM++++H HW + +IKC GV T+DMDN+C LEE++GGKI+YR
Sbjct: 162 RQINLGKGGVTHNMIDDIHNHWKKAEAVRIKCLGVPTLDMDNICFHLEEKSGGKIVYRNI 221
Query: 321 GTVYLFRGRNYDYRTRPRFPLMLWKPVSPVYPRLVKQVPEGLTLEKATEMRQKGSNLIPI 380
+ L+RGRNYD ++RP PLMLWKP P+YPRLVK V +GL E+ EMR +G + +
Sbjct: 222 NILVLYRGRNYDPKSRPIIPLMLWKPHPPIYPRLVKNVADGLEFEETKEMRNRGLHSPAL 281
Query: 381 CKLGKNGVYCDLVKNVREAFEVCDLVRINCEGLTASDYRRIGAKLKDLVPCVLLSFENKH 440
KL +NGVY ++V VRE FE ++VR++C + SD +RIG KLK++VPCV + F+++
Sbjct: 282 MKLTRNGVYVNVVGRVREEFETEEIVRLDCTHVGMSDCKRIGVKLKEMVPCVPILFKDEQ 341
Query: 441 ILIWRG 446
I++WRG
Sbjct: 342 IILWRG 347
>AT4G31010.1 | Symbols: | RNA-binding CRS1 / YhbY (CRM)
domain-containing protein | chr4:15106708-15108446
FORWARD LENGTH=405
Length = 405
Score = 259 bits (661), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 135/314 (42%), Positives = 196/314 (62%), Gaps = 24/314 (7%)
Query: 141 DGVSYVVDGAPFEFRYSYTETPAE-KPVEIREP-VAPFGPDTVPRPWTGRNPLPPGKLKS 198
+GV V PF+FR+SYTE+ + +P+ +REP +PFGPD + R WTG
Sbjct: 74 EGVKTVHSDLPFDFRFSYTESCSNVRPIGLREPKYSPFGPDRLDREWTG----------- 122
Query: 199 FKVFGKLVLPPADKKGTEPVQSPGRCLEELGSRYVEYREEVMGEPLTQDEINDLV--MRT 256
V PA E V G +L + + RE++ G LT+ E LV +
Sbjct: 123 -------VCAPAVNPKVESVD--GVEDPKLEEKRRKVREKIQGASLTEAERKFLVELCQR 173
Query: 257 RKSPSHLSIGRDGLTHNMLENVHTHWMRQRVCQIKCRGVCTVDMDNVCHQLEERTGGKII 316
K+ +++GRDGLTHNML +V+ HW ++KC GV T+DM NV LE++T G+++
Sbjct: 174 NKTKRQVNLGRDGLTHNMLNDVYNHWKHAEAVRVKCLGVPTLDMKNVIFHLEDKTFGQVV 233
Query: 317 YRKGGTVYLFRGRNYDYRTRPRFPLMLWKPVSPVYPRLVKQVPEGLTLEKATEMRQKGSN 376
+ GT+ L+RGRNYD + RP+ PLMLWKP PVYPRL+K +GL++++ MR+KG
Sbjct: 234 SKHSGTLVLYRGRNYDPKKRPKIPLMLWKPHEPVYPRLIKTTIDGLSIDETKAMRKKGLA 293
Query: 377 LIPICKLGKNGVYCDLVKNVREAFEVCDLVRINCEGLTASDYRRIGAKLKDLVPCVLLSF 436
+ + KL KNG Y LV VR+AF V +LVRI+C GL DY++IGAKL+DLVPC+L++F
Sbjct: 294 VPALTKLAKNGYYGSLVPMVRDAFLVSELVRIDCLGLERKDYKKIGAKLRDLVPCILVTF 353
Query: 437 ENKHILIWRGLNWR 450
+ + ++IWRG +++
Sbjct: 354 DKEQVVIWRGKDYK 367
>AT4G31010.2 | Symbols: | RNA-binding CRS1 / YhbY (CRM)
domain-containing protein | chr4:15106708-15108038
FORWARD LENGTH=341
Length = 341
Score = 179 bits (455), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 102/259 (39%), Positives = 148/259 (57%), Gaps = 24/259 (9%)
Query: 141 DGVSYVVDGAPFEFRYSYTETPAE-KPVEIREP-VAPFGPDTVPRPWTGRNPLPPGKLKS 198
+GV V PF+FR+SYTE+ + +P+ +REP +PFGPD + R WTG
Sbjct: 74 EGVKTVHSDLPFDFRFSYTESCSNVRPIGLREPKYSPFGPDRLDREWTG----------- 122
Query: 199 FKVFGKLVLPPADKKGTEPVQSPGRCLEELGSRYVEYREEVMGEPLTQDEINDLV--MRT 256
V PA E V G +L + + RE++ G LT+ E LV +
Sbjct: 123 -------VCAPAVNPKVESVD--GVEDPKLEEKRRKVREKIQGASLTEAERKFLVELCQR 173
Query: 257 RKSPSHLSIGRDGLTHNMLENVHTHWMRQRVCQIKCRGVCTVDMDNVCHQLEERTGGKII 316
K+ +++GRDGLTHNML +V+ HW ++KC GV T+DM NV LE++T G+++
Sbjct: 174 NKTKRQVNLGRDGLTHNMLNDVYNHWKHAEAVRVKCLGVPTLDMKNVIFHLEDKTFGQVV 233
Query: 317 YRKGGTVYLFRGRNYDYRTRPRFPLMLWKPVSPVYPRLVKQVPEGLTLEKATEMRQKGSN 376
+ GT+ L+RGRNYD + RP+ PLMLWKP PVYPRL+K +GL++++ MR+KG
Sbjct: 234 SKHSGTLVLYRGRNYDPKKRPKIPLMLWKPHEPVYPRLIKTTIDGLSIDETKAMRKKGLA 293
Query: 377 LIPICKLGKNGVYCDLVKN 395
+ + KLG + L N
Sbjct: 294 VPALTKLGPYLFHAFLFLN 312
>AT3G01370.1 | Symbols: ATCFM2, CFM2 | CRM family member 2 |
chr3:139033-143477 FORWARD LENGTH=1011
Length = 1011
Score = 62.8 bits (151), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 39/71 (54%)
Query: 263 LSIGRDGLTHNMLENVHTHWMRQRVCQIKCRGVCTVDMDNVCHQLEERTGGKIIYRKGGT 322
L IG+ G+T ++ +H W V +I C + ++M LE +TGG +I+R G
Sbjct: 185 LKIGKAGITEGIVNGIHERWRTTEVVKIFCEDISRMNMKRTHDVLETKTGGLVIWRSGSK 244
Query: 323 VYLFRGRNYDY 333
+ L+RG NY Y
Sbjct: 245 ILLYRGVNYQY 255
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 52/114 (45%), Gaps = 4/114 (3%)
Query: 223 RCLEELGSRYVEYREEVMGEPLTQDEINDLVMRTRKSPSHLSIGRDGLTHNMLENVHTHW 282
+ L +L +R ++ E +T DE L K L +GR G+ +EN+H HW
Sbjct: 558 KVLADLENRESPQLSDIDKEGITNDEKYMLRKIGLKMKPFLLLGRRGVFDGTIENMHLHW 617
Query: 283 MRQRVCQIKCRGVCTVDMDNVCHQLEERTGGKII----YRKGGTVYLFRGRNYD 332
+ + +I C V LE +GG ++ KG + ++RG+NY+
Sbjct: 618 KYRELVKIICNEYSIEAAHKVAEILEAESGGILVAVEMVSKGYAIIVYRGKNYE 671
>AT3G18390.1 | Symbols: EMB1865 | CRS1 / YhbY (CRM)
domain-containing protein | chr3:6313572-6317584 FORWARD
LENGTH=848
Length = 848
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 40/69 (57%)
Query: 263 LSIGRDGLTHNMLENVHTHWMRQRVCQIKCRGVCTVDMDNVCHQLEERTGGKIIYRKGGT 322
++I + GLT ++E ++ W ++ + ++K V DM +E RTGG +I+R G
Sbjct: 262 INIPKAGLTQAVMEKIYDTWRKEELVRLKFHEVLARDMKTAHEIVERRTGGMVIWRAGSV 321
Query: 323 VYLFRGRNY 331
+ ++RG +Y
Sbjct: 322 MVVYRGLDY 330
>AT3G23070.1 | Symbols: ATCFM3A, CFM3A | CRM family member 3A |
chr3:8203548-8207243 FORWARD LENGTH=881
Length = 881
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 48/89 (53%)
Query: 244 LTQDEINDLVMRTRKSPSHLSIGRDGLTHNMLENVHTHWMRQRVCQIKCRGVCTVDMDNV 303
L + E+ L T ++ S + I G+T ++ + W + ++K G ++M +
Sbjct: 221 LPESELRRLRNLTFRTASKMRIRGGGVTQVAVDAIKEKWKSAEIVRLKIEGASALNMRKM 280
Query: 304 CHQLEERTGGKIIYRKGGTVYLFRGRNYD 332
LE++TGG +I+R G ++ L+RG +Y+
Sbjct: 281 HEILEKKTGGLVIWRSGTSISLYRGVSYE 309
>AT4G29750.1 | Symbols: | CRS1 / YhbY (CRM) domain-containing
protein | chr4:14569728-14572962 FORWARD LENGTH=841
Length = 841
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 40/69 (57%)
Query: 263 LSIGRDGLTHNMLENVHTHWMRQRVCQIKCRGVCTVDMDNVCHQLEERTGGKIIYRKGGT 322
+ +G G+T ++E +H W V ++K +++M LE++TGG +I+R G +
Sbjct: 263 VKVGSAGITQALVEAIHEKWEVDEVVKLKFSEPYSLNMKRTHEVLEKKTGGLVIWRSGSS 322
Query: 323 VYLFRGRNY 331
V L+RG +Y
Sbjct: 323 VVLYRGISY 331