Miyakogusa Predicted Gene
- Lj0g3v0265589.3
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0265589.3 Non Chatacterized Hit- tr|F6GUK3|F6GUK3_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,74.68,2e-19,RRM_1,RNA recognition motif domain; no
description,Nucleotide-binding, alpha-beta plait;
SERINE/ARGI,CUFF.17519.3
(77 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G13570.1 | Symbols: SCL30A, At-SCL30A | SC35-like splicing fa... 71 1e-13
AT1G55310.3 | Symbols: SR33, SCL33, At-SCL33 | SC35-like splicin... 69 5e-13
AT1G55310.2 | Symbols: SR33, ATSCL33, SCL33, At-SCL33 | SC35-lik... 69 6e-13
AT1G55310.1 | Symbols: SR33, ATSCL33, SCL33, At-SCL33 | SC35-lik... 69 6e-13
AT3G55460.1 | Symbols: SCL30, At-SCL30 | SC35-like splicing fact... 56 6e-09
AT5G18810.1 | Symbols: SCL28, At-SCL28 | SC35-like splicing fact... 55 1e-08
>AT3G13570.1 | Symbols: SCL30A, At-SCL30A | SC35-like splicing
factor 30A | chr3:4429564-4431602 REVERSE LENGTH=262
Length = 262
Score = 71.2 bits (173), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 32/42 (76%), Positives = 34/42 (80%)
Query: 36 DLPTSLLVRNLHRDTRTEDLHGPFSHFGPIKDVYLPRDYYTG 77
DLPTSLLVRNL D R EDL PF FGP+KD+YLPRDYYTG
Sbjct: 34 DLPTSLLVRNLRHDCRQEDLRRPFEQFGPVKDIYLPRDYYTG 75
>AT1G55310.3 | Symbols: SR33, SCL33, At-SCL33 | SC35-like splicing
factor 33 | chr1:20630676-20632695 FORWARD LENGTH=300
Length = 300
Score = 69.3 bits (168), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 32/43 (74%), Positives = 34/43 (79%)
Query: 35 RDLPTSLLVRNLHRDTRTEDLHGPFSHFGPIKDVYLPRDYYTG 77
RDLPTSLLVRNL D R EDL F FGP+KD+YLPRDYYTG
Sbjct: 32 RDLPTSLLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTG 74
>AT1G55310.2 | Symbols: SR33, ATSCL33, SCL33, At-SCL33 | SC35-like
splicing factor 33 | chr1:20630676-20632567 FORWARD
LENGTH=220
Length = 220
Score = 69.3 bits (168), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 32/43 (74%), Positives = 34/43 (79%)
Query: 35 RDLPTSLLVRNLHRDTRTEDLHGPFSHFGPIKDVYLPRDYYTG 77
RDLPTSLLVRNL D R EDL F FGP+KD+YLPRDYYTG
Sbjct: 32 RDLPTSLLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTG 74
>AT1G55310.1 | Symbols: SR33, ATSCL33, SCL33, At-SCL33 | SC35-like
splicing factor 33 | chr1:20630676-20632695 FORWARD
LENGTH=287
Length = 287
Score = 68.9 bits (167), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 32/43 (74%), Positives = 34/43 (79%)
Query: 35 RDLPTSLLVRNLHRDTRTEDLHGPFSHFGPIKDVYLPRDYYTG 77
RDLPTSLLVRNL D R EDL F FGP+KD+YLPRDYYTG
Sbjct: 32 RDLPTSLLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTG 74
>AT3G55460.1 | Symbols: SCL30, At-SCL30 | SC35-like splicing
factor 30 | chr3:20561024-20563502 FORWARD LENGTH=262
Length = 262
Score = 55.8 bits (133), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 23/37 (62%), Positives = 29/37 (78%)
Query: 41 LLVRNLHRDTRTEDLHGPFSHFGPIKDVYLPRDYYTG 77
LLVRN+ D R E+L PF FGP++DVY+PRDYY+G
Sbjct: 49 LLVRNIPLDCRPEELREPFERFGPVRDVYIPRDYYSG 85
>AT5G18810.1 | Symbols: SCL28, At-SCL28 | SC35-like splicing
factor 28 | chr5:6268925-6271158 REVERSE LENGTH=236
Length = 236
Score = 55.1 bits (131), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 24/40 (60%), Positives = 29/40 (72%)
Query: 38 PTSLLVRNLHRDTRTEDLHGPFSHFGPIKDVYLPRDYYTG 77
P+ LL+RNL D R DL F FGP+KD+YLPR+YYTG
Sbjct: 46 PSGLLIRNLPLDARPNDLRDSFERFGPLKDIYLPRNYYTG 85