Miyakogusa Predicted Gene
- Lj0g3v0265449.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0265449.1 Non Chatacterized Hit- tr|D8U9N9|D8U9N9_VOLCA
Putative uncharacterized protein OS=Volvox carteri
GN=,31.67,1e-18,seg,NULL; C-terminal domain of Poly(A)-binding
protein,Polyadenylate-binding protein/Hyperplastic di,CUFF.17502.1
(353 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G09730.1 | Symbols: RH39 | RH39 | chr4:6136333-6139510 FORWAR... 158 7e-39
AT1G12770.1 | Symbols: ISE1, EMB1586 | P-loop containing nucleos... 72 7e-13
AT4G34910.1 | Symbols: | P-loop containing nucleoside triphosph... 69 4e-12
AT2G40700.1 | Symbols: | P-loop containing nucleoside triphosph... 69 6e-12
AT3G18600.1 | Symbols: | P-loop containing nucleoside triphosph... 68 1e-11
AT5G60990.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 67 3e-11
AT3G02065.3 | Symbols: | P-loop containing nucleoside triphosph... 66 4e-11
AT3G02065.2 | Symbols: | P-loop containing nucleoside triphosph... 66 4e-11
AT3G06980.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 64 2e-10
AT1G71280.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 63 3e-10
AT2G42520.1 | Symbols: | P-loop containing nucleoside triphosph... 62 6e-10
AT5G65900.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 62 6e-10
AT1G71370.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 61 1e-09
AT1G55150.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 60 2e-09
AT3G02065.1 | Symbols: | P-loop containing nucleoside triphosph... 57 1e-08
AT3G58570.1 | Symbols: | P-loop containing nucleoside triphosph... 57 2e-08
AT3G22310.1 | Symbols: PMH1, ATRH9 | putative mitochondrial RNA ... 56 4e-08
AT3G22330.1 | Symbols: PMH2, ATRH53 | putative mitochondrial RNA... 54 1e-07
AT2G33730.1 | Symbols: | P-loop containing nucleoside triphosph... 54 1e-07
AT3G58510.3 | Symbols: | DEA(D/H)-box RNA helicase family prote... 53 3e-07
AT3G58510.2 | Symbols: | DEA(D/H)-box RNA helicase family prote... 53 3e-07
AT3G58510.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 53 3e-07
AT2G47330.1 | Symbols: | P-loop containing nucleoside triphosph... 53 3e-07
AT5G51280.1 | Symbols: | DEAD-box protein abstrakt, putative | ... 52 5e-07
AT1G31970.1 | Symbols: STRS1 | DEA(D/H)-box RNA helicase family ... 52 5e-07
AT3G01540.4 | Symbols: DRH1, ATDRH1 | DEAD box RNA helicase 1 | ... 52 7e-07
AT3G01540.3 | Symbols: DRH1, ATDRH1 | DEAD box RNA helicase 1 | ... 52 7e-07
AT3G01540.2 | Symbols: DRH1, ATDRH1 | DEAD box RNA helicase 1 | ... 52 7e-07
AT3G01540.1 | Symbols: DRH1, ATDRH1 | DEAD box RNA helicase 1 | ... 52 7e-07
AT5G26742.2 | Symbols: emb1138 | DEAD box RNA helicase (RH3) | c... 52 9e-07
AT5G26742.1 | Symbols: emb1138 | DEAD box RNA helicase (RH3) | c... 52 9e-07
AT5G26742.3 | Symbols: emb1138 | DEAD box RNA helicase (RH3) | c... 51 9e-07
AT5G08610.1 | Symbols: | P-loop containing nucleoside triphosph... 51 1e-06
AT5G08620.1 | Symbols: STRS2, ATRH25 | DEA(D/H)-box RNA helicase... 51 2e-06
AT5G14610.2 | Symbols: | DEAD box RNA helicase family protein |... 50 2e-06
AT3G09720.1 | Symbols: | P-loop containing nucleoside triphosph... 50 2e-06
AT1G77030.1 | Symbols: | hydrolases, acting on acid anhydrides,... 50 2e-06
AT1G51380.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 50 2e-06
AT5G54910.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 50 3e-06
AT5G63120.2 | Symbols: | P-loop containing nucleoside triphosph... 50 3e-06
AT2G23350.1 | Symbols: PAB4, PABP4 | poly(A) binding protein 4 |... 50 3e-06
AT5G63120.1 | Symbols: | P-loop containing nucleoside triphosph... 50 3e-06
AT3G19760.1 | Symbols: EIF4A-III | eukaryotic initiation factor ... 49 4e-06
AT5G05450.1 | Symbols: | P-loop containing nucleoside triphosph... 49 4e-06
AT5G62190.1 | Symbols: PRH75 | DEAD box RNA helicase (PRH75) | c... 49 4e-06
AT5G63630.1 | Symbols: | P-loop containing nucleoside triphosph... 49 4e-06
AT4G33370.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 49 5e-06
AT3G16840.1 | Symbols: | P-loop containing nucleoside triphosph... 48 8e-06
>AT4G09730.1 | Symbols: RH39 | RH39 | chr4:6136333-6139510 FORWARD
LENGTH=621
Length = 621
Score = 158 bits (399), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 80/204 (39%), Positives = 123/204 (60%), Gaps = 6/204 (2%)
Query: 100 VVANFKELGVSEELVEVMDGIGEFVPSEIQCVVIPAILEGKSVLLSSPSDHDRTLAYLLP 159
+V NF+ELG+SEE++ + + VP+EIQC+ IPA++E KSV+L S + +TLAYLLP
Sbjct: 110 LVENFQELGLSEEVMGALQELNIEVPTEIQCIGIPAVMERKSVVLGSHTGSGKTLAYLLP 169
Query: 160 LIQLLRRDRELLSSNSK--HPRAIVLCASEEKAAQCYNAAQYIIHDAELK----SAKNCA 213
++QL+R D L +K PR +VLC + E + Q Y A+ I H A + S +
Sbjct: 170 IVQLMREDEANLGKKTKPRRPRTVVLCPTRELSEQVYRVAKSISHHARFRSILVSGGSRI 229
Query: 214 SATSEQSNSSIGLMIGTPCEVLQYIQEGNVVPAELRYLVLDGMDCLLNSGHSPEIHKILK 273
+ N++I +++GTP +LQ+I+EGN+V ++ YLVLD D + + G PEI K L
Sbjct: 230 RPQEDSLNNAIDMVVGTPGRILQHIEEGNMVYGDIAYLVLDEADTMFDRGFGPEIRKFLA 289
Query: 274 PLQDHGSTSTVKRLQTILAISTIA 297
PL + + QT+L +T+
Sbjct: 290 PLNQRALKTNDQGFQTVLVTATMT 313
>AT1G12770.1 | Symbols: ISE1, EMB1586 | P-loop containing nucleoside
triphosphate hydrolases superfamily protein |
chr1:4351888-4353543 FORWARD LENGTH=551
Length = 551
Score = 72.0 bits (175), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 53/218 (24%), Positives = 100/218 (45%), Gaps = 18/218 (8%)
Query: 97 PTMVVANFKELGVSEELVEVMDGIGEFVPSEIQCVVIPAILEGKSVLLSSPSDHDRTLAY 156
P +F+ELG+ + L++ ++ G VP+++Q +PAI++G ++ S + +TLAY
Sbjct: 105 PLFSAKSFEELGLPDSLLDSLEREGFSVPTDVQSAAVPAIIKGHDAVIQSYTGSGKTLAY 164
Query: 157 LLPLIQ----LLRRDRELLSSNSKHP--RAIVLCASEEKAAQCYNAAQYIIHDAELKSAK 210
LLP++ L + R S N K +A+++ S E Q + ++ + +
Sbjct: 165 LLPILSEIGPLAEKSRSSHSENDKRTEIQAMIVAPSRELGMQIVREVEKLLGPVHRRMVQ 224
Query: 211 NCASATSEQSNSSI------GLMIGTPCEVLQYIQEGNVVPAELRYLVLDGMDCLLNSGH 264
+ +++GTP + + + G + R+LVLD +D LL+
Sbjct: 225 QLVGGANRMRQEEALKKNKPAIVVGTPGRIAEISKGGKLHTHGCRFLVLDEVDELLSFNF 284
Query: 265 SPEIHKILKPLQDH------GSTSTVKRLQTILAISTI 296
+IH+IL+ + G QTIL +T+
Sbjct: 285 REDIHRILEHVGKRSGAGPKGEVDERANRQTILVSATV 322
>AT4G34910.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr4:16631661-16634834
FORWARD LENGTH=626
Length = 626
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 87/179 (48%), Gaps = 11/179 (6%)
Query: 103 NFKELGVSEELVEVMDGIGEFVPSEIQCVVIPAILEGKSVLLSSPSDHDRTLAYLLPLIQ 162
+F+ELG+ L+ + G P+ IQ IP ILEGK V+ + + +TLAYLLPL+Q
Sbjct: 47 SFEELGLDSRLIRALTKKGIEKPTLIQQSAIPYILEGKDVVARAKTGSGKTLAYLLPLLQ 106
Query: 163 LLRRDRELLSSNSKHPRAIVLCASEEKAAQCYNAAQYIIH--DAELKSAKNCAS-ATSEQ 219
L + +S P A +L S E Q Y +I +LK+ + +S + S+
Sbjct: 107 KL-FSADSVSKKKLAPSAFILVPSRELCQQVYTEVSSLIELCRVQLKAVQLTSSMSASDM 165
Query: 220 SNSSIGL---MIGTPCEVLQYIQEGNVVPA----ELRYLVLDGMDCLLNSGHSPEIHKI 271
N+ GL ++ TP + + G + P L LVLD D LL+ G+ + +
Sbjct: 166 RNALAGLPEILVSTPACIPKCFAAGVLEPTAVSESLSILVLDEADLLLSYGYEDNLRSV 224
>AT2G40700.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr2:16976783-16979392
FORWARD LENGTH=609
Length = 609
Score = 68.9 bits (167), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 90/185 (48%), Gaps = 18/185 (9%)
Query: 103 NFKELGVSEELVEVM-DGIGEFVPSEIQCVVIPAILEGKSVLLSSPSDHDRTLAYLLPLI 161
+F LG+ +L + + + +G P+ +Q IP IL G+ VL+++P+ +T+AYL PLI
Sbjct: 30 SFSSLGLDTKLSDQLKERMGFEAPTLVQAQAIPVILSGRDVLVNAPTGTGKTIAYLAPLI 89
Query: 162 QLLRRDRELLSSNSKHPRAIVLCASEEKAAQCYNAAQYIIHDAEL----------KSAKN 211
L+ + S A+V+ + E Q Y + ++H K AK
Sbjct: 90 HHLQGHSPKV-DRSHGTFALVIVPTRELCLQVYETLEKLLHRFHWIVPGYVMGGEKKAKE 148
Query: 212 CASATSEQSNSSIGLMIGTPCEVLQYIQE-GNVVPAELRYLVLDGMDCLLNSGHSPEIHK 270
A + I ++I TP +L +++ + V LR+++ D D +L G+ EI +
Sbjct: 149 KA-----RLRKGISILIATPGRLLDHLKNTASFVHKNLRWVIFDEADSILELGYGKEIEQ 203
Query: 271 ILKPL 275
I+K L
Sbjct: 204 IIKLL 208
>AT3G18600.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr3:6399724-6403007
REVERSE LENGTH=568
Length = 568
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/209 (28%), Positives = 101/209 (48%), Gaps = 15/209 (7%)
Query: 86 VVQKGLQNESEPTMVVANFKELGVSEELVEVMDGIGEFVPSEIQCVVIPAILEGKSVLLS 145
+V KG+ M F L +SE+ + +G ++IQ I +LEGK VL +
Sbjct: 80 IVGKGI-------MTNVTFDSLDLSEQTSIAIKEMGFQYMTQIQAGSIQPLLEGKDVLGA 132
Query: 146 SPSDHDRTLAYLLPLIQLLRRDRELLSSNSKHPRAIVLCASEEKAAQCYNAAQYII-HDA 204
+ + +TLA+L+P ++LL ++R S IV+C + E A Q N A+ ++ H +
Sbjct: 133 ARTGSGKTLAFLIPAVELLFKER---FSPRNGTGVIVICPTRELAIQTKNVAEELLKHHS 189
Query: 205 ELKS---AKNCASATSEQSNSSIGLMIGTPCEVLQYIQEGN-VVPAELRYLVLDGMDCLL 260
+ S N + +++ S L+I TP +L ++Q + L+ LV+D D +L
Sbjct: 190 QTVSMVIGGNNRRSEAQRIASGSNLVIATPGRLLDHLQNTKAFIYKHLKCLVIDEADRIL 249
Query: 261 NSGHSPEIHKILKPLQDHGSTSTVKRLQT 289
+++KILK L T+ QT
Sbjct: 250 EENFEEDMNKILKILPKTRQTALFSATQT 278
>AT5G60990.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr5:24546601-24549148 REVERSE LENGTH=456
Length = 456
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 56/192 (29%), Positives = 90/192 (46%), Gaps = 14/192 (7%)
Query: 96 EPTMVVANFKELGVSEELVEVMDGIGEFVPSEIQCVVIPAILEGKSVLLSSPSDHDRTLA 155
E VV F ELGV EELV+ + +G PS+IQ +P LEGK V+ + + +T A
Sbjct: 3 EENEVVKTFAELGVREELVKACERLGWKNPSKIQAEALPFALEGKDVIGLAQTGSGKTGA 62
Query: 156 YLLPLIQLLRRDRELLSSNSKHPR-------AIVLCASEEKAAQCYNAAQYIIHDAELKS 208
+ +P++Q L + S K R A VL + E A Q + + D L+
Sbjct: 63 FAIPILQALL--EYVYDSEPKKGRRPDPAFFACVLSPTRELAIQIAEQFEALGADISLRC 120
Query: 209 AKNCASATSEQSNSSIG----LMIGTPCEVLQYIQEGNVVPAE-LRYLVLDGMDCLLNSG 263
A Q ++G +++ TP + ++ + + L+YLVLD D LLN
Sbjct: 121 AVLVGGIDRMQQTIALGKRPHVIVATPGRLWDHMSDTKGFSLKSLKYLVLDEADRLLNED 180
Query: 264 HSPEIHKILKPL 275
+++IL+ +
Sbjct: 181 FEKSLNQILEEI 192
>AT3G02065.3 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr3:359136-360734
FORWARD LENGTH=505
Length = 505
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 86/180 (47%), Gaps = 5/180 (2%)
Query: 101 VANFKELGVSEELVEVMDGIGEFVPSEIQCVVIPAILEGKSVLLSSPSDHDRTLAYLLPL 160
V F G+ +L+ ++ G P+ IQ IPA L GKS+L S+ + +T ++L+P+
Sbjct: 109 VLTFTSCGLPPKLLLNLETAGYDFPTPIQMQAIPAALTGKSLLASADTGSGKTASFLVPI 168
Query: 161 I-QLLRRDRELLSSNSKHPRAIVLCASEEKAAQCYNAAQYIIHDAELKSA----KNCASA 215
I + E S ++P A+VL + E Q + A+ + K+A + S
Sbjct: 169 ISRCTTYHSEHPSDQRRNPLAMVLAPTRELCVQVEDQAKMLGKGLPFKTALVVGGDPMSG 228
Query: 216 TSEQSNSSIGLMIGTPCEVLQYIQEGNVVPAELRYLVLDGMDCLLNSGHSPEIHKILKPL 275
+ + L+IGTP V+ + + + + VLD +DC+L G ++ +I + L
Sbjct: 229 QLYRIQQGVELIIGTPGRVVDLLSKHTIELDNIMTFVLDEVDCMLQRGFRDQVMQIFQAL 288
>AT3G02065.2 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr3:359136-360734
FORWARD LENGTH=505
Length = 505
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 86/180 (47%), Gaps = 5/180 (2%)
Query: 101 VANFKELGVSEELVEVMDGIGEFVPSEIQCVVIPAILEGKSVLLSSPSDHDRTLAYLLPL 160
V F G+ +L+ ++ G P+ IQ IPA L GKS+L S+ + +T ++L+P+
Sbjct: 109 VLTFTSCGLPPKLLLNLETAGYDFPTPIQMQAIPAALTGKSLLASADTGSGKTASFLVPI 168
Query: 161 I-QLLRRDRELLSSNSKHPRAIVLCASEEKAAQCYNAAQYIIHDAELKSA----KNCASA 215
I + E S ++P A+VL + E Q + A+ + K+A + S
Sbjct: 169 ISRCTTYHSEHPSDQRRNPLAMVLAPTRELCVQVEDQAKMLGKGLPFKTALVVGGDPMSG 228
Query: 216 TSEQSNSSIGLMIGTPCEVLQYIQEGNVVPAELRYLVLDGMDCLLNSGHSPEIHKILKPL 275
+ + L+IGTP V+ + + + + VLD +DC+L G ++ +I + L
Sbjct: 229 QLYRIQQGVELIIGTPGRVVDLLSKHTIELDNIMTFVLDEVDCMLQRGFRDQVMQIFQAL 288
>AT3G06980.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr3:2201531-2204662 FORWARD LENGTH=781
Length = 781
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 81/166 (48%), Gaps = 11/166 (6%)
Query: 104 FKELGVSEELVEVMDGIGEFVPSEIQCVVIPAILEGKSVLLSSPSDHDRTLAYLLPLIQL 163
F E+G SE++++ + P+ IQ + +++GKS +++ S +TLAYL+P+IQ
Sbjct: 376 FAEIGCSEDMMKALKEQNFDRPAHIQAMAFSPVIDGKSCIIADQSGSGKTLAYLVPVIQR 435
Query: 164 LRRDRELLSSNSKH----PRAIVLCASEEKAAQ----CYNAAQYIIHDAELKSAKNCASA 215
LR E L +SK PR IVL + E A+Q C + ++ + +
Sbjct: 436 LR--EEELQGHSKSSPGCPRVIVLVPTAELASQVLANCRSISKSGVPFRSMVVTGGFRQR 493
Query: 216 TS-EQSNSSIGLMIGTPCEVLQYIQEGNVVPAELRYLVLDGMDCLL 260
T E + ++I TP + EG + + LR +LD +D L
Sbjct: 494 TQLENLEQGVDVLIATPGRFTYLMNEGILGLSNLRCAILDEVDILF 539
>AT1G71280.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr1:26870262-26872152 REVERSE LENGTH=465
Length = 465
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 55/213 (25%), Positives = 101/213 (47%), Gaps = 18/213 (8%)
Query: 104 FKELG--VSEELVEVMDGIGEFVPSEIQCVVIPAILEGKSVLLSSPSDHDRTLAYLLPLI 161
F EL +SE+++E +D G V + +Q IP + K V++ + + +TLA+LLP I
Sbjct: 17 FSELKPPLSEDIIEALDRSGFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTLAFLLPFI 76
Query: 162 QLLRRDRELLSSNSKHPR-----AIVLCASEEKAAQCYNAAQYIIHDAELKSAKNCASAT 216
+++RR SNS P+ +++ + E +AQ + A+ + D + +
Sbjct: 77 EIIRR------SNSYPPKPHQVMGVIISPTRELSAQIHKVARAVRLD--FAKCREVEADM 128
Query: 217 SEQSNSSIGLMIGTPCEVLQYIQEGNVVPAE-LRYLVLDGMDCLLNSGHSPEIHKILKPL 275
+ L+IGTP + ++ + L L+LD D LL+ G +++ I+ L
Sbjct: 129 NTLEEEGANLLIGTPGRLSDMMKRMEFLDFRNLEILILDEADRLLDMGFQKQVNYIISRL 188
Query: 276 QDHGSTSTVKRLQTILAISTIAEVLGEESPLVK 308
T QT A++ +A+ G +P +K
Sbjct: 189 PKQRRTGLFSATQT-QAVADLAKA-GLRNPYLK 219
>AT2G42520.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr2:17705382-17708744
FORWARD LENGTH=633
Length = 633
Score = 62.0 bits (149), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 41/180 (22%), Positives = 84/180 (46%), Gaps = 7/180 (3%)
Query: 101 VANFKELGVSEELVEVMDGIGEFVPSEIQCVVIPAILEGKSVLLSSPSDHDRTLAYLLPL 160
V F E+ + E L + P+ +Q IP +LEG+ ++ + + +T A+ P+
Sbjct: 158 VNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPILLEGRDLMACAQTGSGKTAAFCFPI 217
Query: 161 IQLLRRDREL---LSSNSKHPRAIVLCASEEKAAQCYNAAQYIIHDAELKSAKNCASATS 217
I + +D+ + S + +P A++L + E A+Q ++ A+ + +K
Sbjct: 218 ISGIMKDQHVQRPRGSRTVYPLAVILSPTRELASQIHDEAKKFSYQTGVKVVVAYGGTPI 277
Query: 218 EQS----NSSIGLMIGTPCEVLQYIQEGNVVPAELRYLVLDGMDCLLNSGHSPEIHKILK 273
Q + +++ TP + ++ V +R+L LD D +L+ G P+I KI++
Sbjct: 278 NQQLRELERGVDILVATPGRLNDLLERARVSMQMIRFLALDEADRMLDMGFEPQIRKIVE 337
>AT5G65900.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr5:26358328-26361244 FORWARD LENGTH=633
Length = 633
Score = 62.0 bits (149), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 47/196 (23%), Positives = 92/196 (46%), Gaps = 8/196 (4%)
Query: 99 MVVANFKELGVSEELVEVMDGIGEFVPSEIQCVVIPAILEGKSVLLSSPSDHDRTLAYLL 158
M F+ L +S+ + + +G ++IQ IP ++ G+ VL ++ + +TLA+L+
Sbjct: 151 MTNKTFESLSLSDNTYKSIKEMGFARMTQIQAKAIPPLMMGEDVLGAARTGSGKTLAFLI 210
Query: 159 PLIQLLRRDRELLSSNSKHPRAIVLCASEEKAAQCYNAAQYII--HDAELKSAKNCASAT 216
P ++LL R + + + +V+C + E A Q Y A+ ++ H +
Sbjct: 211 PAVELLYRVKFTPRNGTG---VLVICPTRELAIQSYGVAKELLKYHSQTVGKVIGGEKRK 267
Query: 217 SEQS--NSSIGLMIGTPCEVLQYIQEGN-VVPAELRYLVLDGMDCLLNSGHSPEIHKILK 273
+E + L++ TP +L +++ N + L++LV+D D +L ++ KIL
Sbjct: 268 TEAEILAKGVNLLVATPGRLLDHLENTNGFIFKNLKFLVMDEADRILEQNFEEDLKKILN 327
Query: 274 PLQDHGSTSTVKRLQT 289
L TS Q+
Sbjct: 328 LLPKTRQTSLFSATQS 343
>AT1G71370.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr1:26897235-26899381 REVERSE LENGTH=558
Length = 558
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/206 (24%), Positives = 93/206 (45%), Gaps = 20/206 (9%)
Query: 98 TMVVANFKELG--VSEELVEVMDGIGEFVPSEIQCVVIPAILEGKSVLLSSPSDHDRTLA 155
T + F EL +SE+++E +D G V + +Q IP + K V++ + + +TLA
Sbjct: 10 TKALPRFSELKPPLSEDIIEALDRSGFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTLA 69
Query: 156 YLLPLIQLLRRDRELLSSNSKHPR-----AIVLCASEEKAAQCYNAAQYI------IHDA 204
+LLP I+++RR SNS P+ +++ + E +AQ + A+ ++
Sbjct: 70 FLLPFIEIIRR------SNSYPPKPHQVMGVIISPTRELSAQIHKVAEPFVSTLPNVNSV 123
Query: 205 ELKSAKNCASATSEQSNSSIGLMIGTPCEVLQYIQEGNVVPAE-LRYLVLDGMDCLLNSG 263
L + + + L+IGTP + ++ + L L+LD D LL+ G
Sbjct: 124 LLVGGREVEADMNTLEEEGANLLIGTPGRLSDMMKRMEFLDFRNLEILILDEADRLLDMG 183
Query: 264 HSPEIHKILKPLQDHGSTSTVKRLQT 289
+++ I+ L T QT
Sbjct: 184 FQKQVNYIISRLPKQRRTGLFSATQT 209
>AT1G55150.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr1:20574634-20577141 FORWARD LENGTH=501
Length = 501
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 85/178 (47%), Gaps = 10/178 (5%)
Query: 101 VANFKELGVSEELVEVMDGIGEFVPSEIQCVVIPAILEGKSVLLSSPSDHDRTLAYLLPL 160
V +F+++G + ++E + G P+ IQ P ++G+ ++ + + +TL+YLLP
Sbjct: 98 VKSFRDVGFPDYVLEEVKKAGFTEPTPIQSQGWPMAMKGRDLIGIAETGSGKTLSYLLPA 157
Query: 161 IQLLRRDRELLSSNSKHPRAIVLCASEEKAAQCYNAAQYIIHDAELKSAKNCASATSEQS 220
I + + + + ++ P +VL + E A Q A +++K+ C +
Sbjct: 158 I--VHVNAQPMLAHGDGPIVLVLAPTRELAVQIQQEASKFGSSSKIKT--TCIYGGVPKG 213
Query: 221 ------NSSIGLMIGTPCEVLQYIQEGNVVPAELRYLVLDGMDCLLNSGHSPEIHKIL 272
+ ++I TP ++ ++ N + YLVLD D +L+ G P+I KI+
Sbjct: 214 PQVRDLQKGVEIVIATPGRLIDMMESNNTNLRRVTYLVLDEADRMLDMGFDPQIRKIV 271
>AT3G02065.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr3:359628-360734
FORWARD LENGTH=368
Length = 368
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 72/148 (48%), Gaps = 5/148 (3%)
Query: 133 IPAILEGKSVLLSSPSDHDRTLAYLLPLI-QLLRRDRELLSSNSKHPRAIVLCASEEKAA 191
IPA L GKS+L S+ + +T ++L+P+I + E S ++P A+VL + E
Sbjct: 4 IPAALTGKSLLASADTGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTRELCV 63
Query: 192 QCYNAAQYIIHDAELKSA----KNCASATSEQSNSSIGLMIGTPCEVLQYIQEGNVVPAE 247
Q + A+ + K+A + S + + L+IGTP V+ + + +
Sbjct: 64 QVEDQAKMLGKGLPFKTALVVGGDPMSGQLYRIQQGVELIIGTPGRVVDLLSKHTIELDN 123
Query: 248 LRYLVLDGMDCLLNSGHSPEIHKILKPL 275
+ VLD +DC+L G ++ +I + L
Sbjct: 124 IMTFVLDEVDCMLQRGFRDQVMQIFQAL 151
>AT3G58570.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr3:21657099-21660352
FORWARD LENGTH=646
Length = 646
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/180 (21%), Positives = 80/180 (44%), Gaps = 7/180 (3%)
Query: 101 VANFKELGVSEELVEVMDGIGEFVPSEIQCVVIPAILEGKSVLLSSPSDHDRTLAYLLPL 160
V F E+ + E L + P+ +Q IP + G+ ++ + + +T A+ P+
Sbjct: 145 VNTFAEIDLGEALNLNIQRCKYVKPTPVQRNAIPILAAGRDLMACAQTGSGKTAAFCFPI 204
Query: 161 IQLLRRDREL---LSSNSKHPRAIVLCASEEKAAQCYNAAQYIIHDAELKSAKNCASATS 217
I + +D+ + +P A++L + E A Q ++ A+ + +K
Sbjct: 205 ISGIMKDQHIERPRGVRGVYPLAVILSPTRELACQIHDEARKFSYQTGVKVVVAYGGTPV 264
Query: 218 EQS----NSSIGLMIGTPCEVLQYIQEGNVVPAELRYLVLDGMDCLLNSGHSPEIHKILK 273
Q + +++ TP + ++ G V +R+L LD D +L+ G P+I KI++
Sbjct: 265 NQQIRELERGVDILVATPGRLNDLLERGRVSLQMVRFLALDEADRMLDMGFEPQIRKIVQ 324
>AT3G22310.1 | Symbols: PMH1, ATRH9 | putative mitochondrial RNA
helicase 1 | chr3:7887382-7889806 FORWARD LENGTH=610
Length = 610
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 89/180 (49%), Gaps = 19/180 (10%)
Query: 106 ELGVSEELVEVMDGIG--EFVPSEIQCVVIPAILEGKSVLLSSPSDHDRTLAYLLPLIQL 163
+LG+S E+V+ + G G + P IQ V+ +EG+ ++ + + +TLA+ +P+I
Sbjct: 120 DLGISPEIVKALKGRGIEKLFP--IQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIID- 176
Query: 164 LRRDRELLSSNSKH-----PRAIVLCASEEKAAQC---YNAAQYIIHDAELKSAKNCASA 215
+++ N+KH P+ +VL + E A Q + + + L
Sbjct: 177 -----KIIKFNAKHGRGKNPQCLVLAPTRELARQVEKEFRESAPSLDTICLYGGTPIGQQ 231
Query: 216 TSEQSNSSIGLMIGTPCEVLQYIQEGNVVPAELRYLVLDGMDCLLNSGHSPEIHKILKPL 275
E N I + +GTP ++ ++ G + +E++++VLD D +L G + ++ IL+ L
Sbjct: 232 MREL-NYGIDVAVGTPGRIIDLMKRGALNLSEVQFVVLDEADQMLQVGFAEDVEIILQKL 290
>AT3G22330.1 | Symbols: PMH2, ATRH53 | putative mitochondrial RNA
helicase 2 | chr3:7892641-7895145 FORWARD LENGTH=616
Length = 616
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 88/180 (48%), Gaps = 19/180 (10%)
Query: 106 ELGVSEELVEVMD--GIGEFVPSEIQCVVIPAILEGKSVLLSSPSDHDRTLAYLLPLIQL 163
ELG+S E+V+ + GI + P IQ V+ +EG+ ++ + + +TLA+ +P+I
Sbjct: 108 ELGISPEIVKALSSKGIEKLFP--IQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIID- 164
Query: 164 LRRDRELLSSNSKHPRA-----IVLCASEEKAAQC---YNAAQYIIHDAELKSAKNCASA 215
+++ N+KH R +VL + E A Q + + + L
Sbjct: 165 -----KIIKYNAKHGRGRNPLCLVLAPTRELARQVEKEFRESAPSLDTICLYGGTPIGQQ 219
Query: 216 TSEQSNSSIGLMIGTPCEVLQYIQEGNVVPAELRYLVLDGMDCLLNSGHSPEIHKILKPL 275
Q + + + +GTP V+ ++ G + +E++++VLD D +L G + ++ IL+ L
Sbjct: 220 M-RQLDYGVDVAVGTPGRVIDLMKRGALNLSEVQFVVLDEADQMLQVGFAEDVEIILEKL 278
>AT2G33730.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr2:14265679-14267880
REVERSE LENGTH=733
Length = 733
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 83/178 (46%), Gaps = 5/178 (2%)
Query: 103 NFKELGVSEELVEVMDGIGEFVPSEIQCVVIPAILEGKSVLLSSPSDHDRTLAYLLPLIQ 162
+++E ++ EL++ ++ G PS IQ IP L+ + V+ + + +T A++LP++
Sbjct: 314 SWEESKLTSELLKAVERAGYKKPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLA 373
Query: 163 LLRRDRELLSSN-SKHPRAIVLCASEEKAAQCYNAAQYIIHDAELKSAKNCASATSEQSN 221
+ R + N ++ P A+V+ + E A Q H + + E+
Sbjct: 374 YISRLPPMSEENETEGPYAVVMAPTRELAQQIEEETVKFAHYLGFRVTSIVGGQSIEEQG 433
Query: 222 SSIG----LMIGTPCEVLQYIQEGNVVPAELRYLVLDGMDCLLNSGHSPEIHKILKPL 275
I ++I TP ++ ++ V + Y+VLD D +++ G P++ +L +
Sbjct: 434 LKITQGCEIVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVAGVLDAM 491
>AT3G58510.3 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr3:21640608-21643464 FORWARD LENGTH=612
Length = 612
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/158 (21%), Positives = 73/158 (46%), Gaps = 7/158 (4%)
Query: 125 PSEIQCVVIPAILEGKSVLLSSPSDHDRTLAYLLPLIQLLRRDREL---LSSNSKHPRAI 181
P+ +Q IP +L + ++ + + +T A+ P+I + +D+ + S + +P A+
Sbjct: 174 PTPVQRHAIPILLAERDLMACAQTGSGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAV 233
Query: 182 VLCASEEKAAQCYNAAQYIIHDAELKSAKNCASATSEQS----NSSIGLMIGTPCEVLQY 237
+L + E A Q ++ A+ + +K Q +++ TP +
Sbjct: 234 ILSPTRELACQIHDEAKKFSYQTGVKVVVAYGGTPIHQQLRELERGCDILVATPGRLNDL 293
Query: 238 IQEGNVVPAELRYLVLDGMDCLLNSGHSPEIHKILKPL 275
++ V +R+L LD D +L+ G P+I KI++ +
Sbjct: 294 LERARVSMQMIRFLALDEADRMLDMGFEPQIRKIVEQM 331
>AT3G58510.2 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr3:21640608-21643464 FORWARD LENGTH=612
Length = 612
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/158 (21%), Positives = 73/158 (46%), Gaps = 7/158 (4%)
Query: 125 PSEIQCVVIPAILEGKSVLLSSPSDHDRTLAYLLPLIQLLRRDREL---LSSNSKHPRAI 181
P+ +Q IP +L + ++ + + +T A+ P+I + +D+ + S + +P A+
Sbjct: 174 PTPVQRHAIPILLAERDLMACAQTGSGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAV 233
Query: 182 VLCASEEKAAQCYNAAQYIIHDAELKSAKNCASATSEQS----NSSIGLMIGTPCEVLQY 237
+L + E A Q ++ A+ + +K Q +++ TP +
Sbjct: 234 ILSPTRELACQIHDEAKKFSYQTGVKVVVAYGGTPIHQQLRELERGCDILVATPGRLNDL 293
Query: 238 IQEGNVVPAELRYLVLDGMDCLLNSGHSPEIHKILKPL 275
++ V +R+L LD D +L+ G P+I KI++ +
Sbjct: 294 LERARVSMQMIRFLALDEADRMLDMGFEPQIRKIVEQM 331
>AT3G58510.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr3:21640608-21643464 FORWARD LENGTH=612
Length = 612
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/158 (21%), Positives = 73/158 (46%), Gaps = 7/158 (4%)
Query: 125 PSEIQCVVIPAILEGKSVLLSSPSDHDRTLAYLLPLIQLLRRDREL---LSSNSKHPRAI 181
P+ +Q IP +L + ++ + + +T A+ P+I + +D+ + S + +P A+
Sbjct: 174 PTPVQRHAIPILLAERDLMACAQTGSGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAV 233
Query: 182 VLCASEEKAAQCYNAAQYIIHDAELKSAKNCASATSEQS----NSSIGLMIGTPCEVLQY 237
+L + E A Q ++ A+ + +K Q +++ TP +
Sbjct: 234 ILSPTRELACQIHDEAKKFSYQTGVKVVVAYGGTPIHQQLRELERGCDILVATPGRLNDL 293
Query: 238 IQEGNVVPAELRYLVLDGMDCLLNSGHSPEIHKILKPL 275
++ V +R+L LD D +L+ G P+I KI++ +
Sbjct: 294 LERARVSMQMIRFLALDEADRMLDMGFEPQIRKIVEQM 331
>AT2G47330.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr2:19429083-19431617
REVERSE LENGTH=760
Length = 760
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/176 (22%), Positives = 80/176 (45%), Gaps = 6/176 (3%)
Query: 101 VANFKELGVSEELVEVMDGIGEFVPSEIQCVVIPAILEGKSVLLSSPSDHDRTLAYLLPL 160
V F++ G S +++ + P+ IQC +P +L G+ V+ + + +T A++LP+
Sbjct: 227 VKTFEDCGFSSQIMSAIKKQAYEKPTAIQCQALPIVLSGRDVIGIAKTGSGKTAAFVLPM 286
Query: 161 IQLLRRDRELLSSNSKHPRAIVLCASEEKAAQCYNAAQYIIHDAELK-SAKNCASATSEQ 219
I + EL + P ++ + E A Q + A+ L+ SA + EQ
Sbjct: 287 IVHIMDQPEL--QRDEGPIGVICAPTRELAHQIFLEAKKFSKAYGLRVSAVYGGMSKHEQ 344
Query: 220 S---NSSIGLMIGTPCEVLQYIQEGNVVPAELRYLVLDGMDCLLNSGHSPEIHKIL 272
+ +++ TP ++ ++ + YLVLD D + + G P++ I+
Sbjct: 345 FKELKAGCEIVVATPGRLIDMLKMKALTMMRASYLVLDEADRMFDLGFEPQVRSIV 400
>AT5G51280.1 | Symbols: | DEAD-box protein abstrakt, putative |
chr5:20841456-20843645 FORWARD LENGTH=591
Length = 591
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 40/194 (20%), Positives = 85/194 (43%), Gaps = 15/194 (7%)
Query: 101 VANFKELGVSEELVEVMDGIGEFVPSEIQCVVIPAILEGKSVLLSSPSDHDRTLAYLLPL 160
+ NFK++ +++ + G P+ IQ +P IL G+ ++ + + +TL ++LP+
Sbjct: 145 IKNFKDMKFPRPVLDTLKEKGIVQPTPIQVQGLPVILAGRDMIGIAFTGSGKTLVFVLPM 204
Query: 161 IQLLRRDRELLS-SNSKHPRAIVLCASEEKAAQCYNAAQYIIHDAELKSAKN-------C 212
I + ++ ++ + + P +++C S E A Q Y + + A L A C
Sbjct: 205 IMIALQEEMMMPIAAGEGPIGLIVCPSRELARQTYEVVEQFV--APLVEAGYPPLRSLLC 262
Query: 213 ASATSEQSN-----SSIGLMIGTPCEVLQYIQEGNVVPAELRYLVLDGMDCLLNSGHSPE 267
+S + +++ TP + + + + RYL LD D L++ G +
Sbjct: 263 IGGIDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMSLDACRYLTLDEADRLVDLGFEDD 322
Query: 268 IHKILKPLQDHGST 281
I ++ + T
Sbjct: 323 IREVFDHFKSQRQT 336
>AT1G31970.1 | Symbols: STRS1 | DEA(D/H)-box RNA helicase family
protein | chr1:11479921-11482707 FORWARD LENGTH=537
Length = 537
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 94/199 (47%), Gaps = 14/199 (7%)
Query: 83 EKKVVQKGLQNESEPTMVVANFKELGVSEELVEVMDGIGEF-VPSEIQCVVIPAILEGKS 141
++KVV G E + F E + E V+D F PS IQ P +L+G+
Sbjct: 97 QQKVVVTGKGVEEAKYAALKTFAESNLPEN---VLDCCKTFEKPSPIQSHTWPFLLDGRD 153
Query: 142 VLLSSPSDHDRTLAYLLP-LIQLLRRDRELLSSNSK-HPRAIVLCASEEKAAQCYNAAQY 199
++ + + +TLA+ +P ++ +L++++++ + K +P +VL + E A Q + +
Sbjct: 154 LIGIAKTGSGKTLAFGIPAIMHVLKKNKKIGGGSKKVNPTCLVLSPTRELAVQISDVLRE 213
Query: 200 IIHDAELKSAKNCASATSEQS------NSSIGLMIGTPCEVLQYIQEGNVVPAELRYLVL 253
LKS C S + S + ++IGTP + I+ + +++ ++VL
Sbjct: 214 AGEPCGLKSI--CVYGGSSKGPQISAIRSGVDIVIGTPGRLRDLIESNVLRLSDVSFVVL 271
Query: 254 DGMDCLLNSGHSPEIHKIL 272
D D +L+ G + IL
Sbjct: 272 DEADRMLDMGFEEPVRFIL 290
>AT3G01540.4 | Symbols: DRH1, ATDRH1 | DEAD box RNA helicase 1 |
chr3:213077-216142 REVERSE LENGTH=619
Length = 619
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 41/177 (23%), Positives = 77/177 (43%), Gaps = 11/177 (6%)
Query: 103 NFKELGVSEELVEVMDGIGEFVPSEIQCVVIPAILEGKSVLLSSPSDHDRTLAYLLPLIQ 162
+F+ G EL+ + G P+ IQ P ++G+ ++ + + +TL YL+P
Sbjct: 159 SFEATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFL 218
Query: 163 LLRRDRELLSSNSKHPRAIVLCASEEKAAQCYNAAQYIIHDAELKSAKNCASATSEQS-- 220
L+R R + + P +VL + E A Q A + + C + +
Sbjct: 219 HLQRIR---NDSRMGPTILVLSPTRELATQIQEEAVKFGRSSRISC--TCLYGGAPKGPQ 273
Query: 221 ----NSSIGLMIGTPCEVLQYIQEGNVVPAELRYLVLDGMDCLLNSGHSPEIHKILK 273
+++ TP + ++ + ++ YLVLD D +L+ G P+I KI+K
Sbjct: 274 LRDLERGADIVVATPGRLNDILEMRRISLRQISYLVLDEADRMLDMGFEPQIRKIVK 330
>AT3G01540.3 | Symbols: DRH1, ATDRH1 | DEAD box RNA helicase 1 |
chr3:213077-216142 REVERSE LENGTH=619
Length = 619
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 41/177 (23%), Positives = 77/177 (43%), Gaps = 11/177 (6%)
Query: 103 NFKELGVSEELVEVMDGIGEFVPSEIQCVVIPAILEGKSVLLSSPSDHDRTLAYLLPLIQ 162
+F+ G EL+ + G P+ IQ P ++G+ ++ + + +TL YL+P
Sbjct: 159 SFEATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFL 218
Query: 163 LLRRDRELLSSNSKHPRAIVLCASEEKAAQCYNAAQYIIHDAELKSAKNCASATSEQS-- 220
L+R R + + P +VL + E A Q A + + C + +
Sbjct: 219 HLQRIR---NDSRMGPTILVLSPTRELATQIQEEAVKFGRSSRISC--TCLYGGAPKGPQ 273
Query: 221 ----NSSIGLMIGTPCEVLQYIQEGNVVPAELRYLVLDGMDCLLNSGHSPEIHKILK 273
+++ TP + ++ + ++ YLVLD D +L+ G P+I KI+K
Sbjct: 274 LRDLERGADIVVATPGRLNDILEMRRISLRQISYLVLDEADRMLDMGFEPQIRKIVK 330
>AT3G01540.2 | Symbols: DRH1, ATDRH1 | DEAD box RNA helicase 1 |
chr3:213077-216142 REVERSE LENGTH=619
Length = 619
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 41/177 (23%), Positives = 77/177 (43%), Gaps = 11/177 (6%)
Query: 103 NFKELGVSEELVEVMDGIGEFVPSEIQCVVIPAILEGKSVLLSSPSDHDRTLAYLLPLIQ 162
+F+ G EL+ + G P+ IQ P ++G+ ++ + + +TL YL+P
Sbjct: 159 SFEATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFL 218
Query: 163 LLRRDRELLSSNSKHPRAIVLCASEEKAAQCYNAAQYIIHDAELKSAKNCASATSEQS-- 220
L+R R + + P +VL + E A Q A + + C + +
Sbjct: 219 HLQRIR---NDSRMGPTILVLSPTRELATQIQEEAVKFGRSSRISC--TCLYGGAPKGPQ 273
Query: 221 ----NSSIGLMIGTPCEVLQYIQEGNVVPAELRYLVLDGMDCLLNSGHSPEIHKILK 273
+++ TP + ++ + ++ YLVLD D +L+ G P+I KI+K
Sbjct: 274 LRDLERGADIVVATPGRLNDILEMRRISLRQISYLVLDEADRMLDMGFEPQIRKIVK 330
>AT3G01540.1 | Symbols: DRH1, ATDRH1 | DEAD box RNA helicase 1 |
chr3:213077-216142 REVERSE LENGTH=618
Length = 618
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 41/177 (23%), Positives = 77/177 (43%), Gaps = 11/177 (6%)
Query: 103 NFKELGVSEELVEVMDGIGEFVPSEIQCVVIPAILEGKSVLLSSPSDHDRTLAYLLPLIQ 162
+F+ G EL+ + G P+ IQ P ++G+ ++ + + +TL YL+P
Sbjct: 159 SFEATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFL 218
Query: 163 LLRRDRELLSSNSKHPRAIVLCASEEKAAQCYNAAQYIIHDAELKSAKNCASATSEQS-- 220
L+R R + + P +VL + E A Q A + + C + +
Sbjct: 219 HLQRIR---NDSRMGPTILVLSPTRELATQIQEEAVKFGRSSRISC--TCLYGGAPKGPQ 273
Query: 221 ----NSSIGLMIGTPCEVLQYIQEGNVVPAELRYLVLDGMDCLLNSGHSPEIHKILK 273
+++ TP + ++ + ++ YLVLD D +L+ G P+I KI+K
Sbjct: 274 LRDLERGADIVVATPGRLNDILEMRRISLRQISYLVLDEADRMLDMGFEPQIRKIVK 330
>AT5G26742.2 | Symbols: emb1138 | DEAD box RNA helicase (RH3) |
chr5:9285540-9288871 REVERSE LENGTH=748
Length = 748
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 76/162 (46%), Gaps = 7/162 (4%)
Query: 119 GIGEFVPSEIQCVVIPAILEGKSVLLSSPSDHDRTLAYLLPLIQLLRR---DRELLSSNS 175
GI P + + V++PA L+G+ ++ + + +TLA+ +P+I+ L D +
Sbjct: 121 GITHLFPIQ-RAVLVPA-LQGRDIIARAKTGTGKTLAFGIPIIKRLTEEAGDYTAFRRSG 178
Query: 176 KHPRAIVLCASEEKAAQCYNAAQYIIHDAELKSAKNCASATSEQS--NSSIGLMIGTPCE 233
+ P+ +VL + E A Q + S T +QS + +++GTP
Sbjct: 179 RLPKFLVLAPTRELAKQVEKEIKESAPYLSTVCVYGGVSYTIQQSALTRGVDVVVGTPGR 238
Query: 234 VLQYIQEGNVVPAELRYLVLDGMDCLLNSGHSPEIHKILKPL 275
++ I+ ++ E+ YLVLD D +L G + IL+ L
Sbjct: 239 IIDLIEGRSLKLGEVEYLVLDEADQMLAVGFEEAVESILENL 280
>AT5G26742.1 | Symbols: emb1138 | DEAD box RNA helicase (RH3) |
chr5:9285540-9288871 REVERSE LENGTH=747
Length = 747
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 76/162 (46%), Gaps = 7/162 (4%)
Query: 119 GIGEFVPSEIQCVVIPAILEGKSVLLSSPSDHDRTLAYLLPLIQLLRR---DRELLSSNS 175
GI P + + V++PA L+G+ ++ + + +TLA+ +P+I+ L D +
Sbjct: 121 GITHLFPIQ-RAVLVPA-LQGRDIIARAKTGTGKTLAFGIPIIKRLTEEAGDYTAFRRSG 178
Query: 176 KHPRAIVLCASEEKAAQCYNAAQYIIHDAELKSAKNCASATSEQS--NSSIGLMIGTPCE 233
+ P+ +VL + E A Q + S T +QS + +++GTP
Sbjct: 179 RLPKFLVLAPTRELAKQVEKEIKESAPYLSTVCVYGGVSYTIQQSALTRGVDVVVGTPGR 238
Query: 234 VLQYIQEGNVVPAELRYLVLDGMDCLLNSGHSPEIHKILKPL 275
++ I+ ++ E+ YLVLD D +L G + IL+ L
Sbjct: 239 IIDLIEGRSLKLGEVEYLVLDEADQMLAVGFEEAVESILENL 280
>AT5G26742.3 | Symbols: emb1138 | DEAD box RNA helicase (RH3) |
chr5:9285540-9288618 REVERSE LENGTH=655
Length = 655
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 73/153 (47%), Gaps = 6/153 (3%)
Query: 128 IQCVVIPAILEGKSVLLSSPSDHDRTLAYLLPLIQLLRR---DRELLSSNSKHPRAIVLC 184
++ V++PA L+G+ ++ + + +TLA+ +P+I+ L D + + P+ +VL
Sbjct: 36 VRAVLVPA-LQGRDIIARAKTGTGKTLAFGIPIIKRLTEEAGDYTAFRRSGRLPKFLVLA 94
Query: 185 ASEEKAAQCYNAAQYIIHDAELKSAKNCASATSEQS--NSSIGLMIGTPCEVLQYIQEGN 242
+ E A Q + S T +QS + +++GTP ++ I+ +
Sbjct: 95 PTRELAKQVEKEIKESAPYLSTVCVYGGVSYTIQQSALTRGVDVVVGTPGRIIDLIEGRS 154
Query: 243 VVPAELRYLVLDGMDCLLNSGHSPEIHKILKPL 275
+ E+ YLVLD D +L G + IL+ L
Sbjct: 155 LKLGEVEYLVLDEADQMLAVGFEEAVESILENL 187
>AT5G08610.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr5:2790341-2794059
FORWARD LENGTH=850
Length = 850
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/204 (25%), Positives = 92/204 (45%), Gaps = 34/204 (16%)
Query: 128 IQCVVIPAILEGKSVLLSSPSDHDRTLAYLLPLIQLLRRDRELLSSNSKHPRAIVL--CA 185
+Q +P IL+GK VL + + +T+A+LLP I+ + + S +S+ P IVL C
Sbjct: 408 VQEATLPIILQGKDVLAKAKTGTGKTVAFLLPAIEAVIKS-PPASRDSRQPPIIVLVVCP 466
Query: 186 SEEKAAQCYNAA------------QYIIHDAELKSAKNCASATSEQSNSSIGLMIGTPCE 233
+ E A+Q A Q +I +L + + Q +++ TP
Sbjct: 467 TRELASQAAAEANTLLKYHPSIGVQVVIGGTKLPTEQRRMQTNPCQ------ILVATPGR 520
Query: 234 VLQYIQEGNVVPAEL---RYLVLDGMDCLLNSGHSPEIHKILKPLQDHGSTSTVKRLQTI 290
+ +I+ + L + LVLD D LL+ G +I +I+ + K+ QT
Sbjct: 521 LKDHIENTSGFATRLMGVKVLVLDEADHLLDMGFRRDIERII--------AAVPKQRQTF 572
Query: 291 LAISTIAEVLGEESPLVKRLERDH 314
L +T+ E + + + L+RDH
Sbjct: 573 LFSATVPEEVRQICHVA--LKRDH 594
>AT5G08620.1 | Symbols: STRS2, ATRH25 | DEA(D/H)-box RNA helicase
family protein | chr5:2794540-2797548 FORWARD LENGTH=563
Length = 563
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 92/198 (46%), Gaps = 22/198 (11%)
Query: 128 IQCVVIPAILEGKSVLLSSPSDHDRTLAYLLPLIQLLRRDRELLSSNSKHPRAIVL--CA 185
+Q +P IL+GK +L + + +T+A+LLP I+ + + S +++HP IVL C
Sbjct: 106 VQEATLPLILQGKDILAKAKTGTGKTVAFLLPSIEAVIKAPP-ASRDNRHPPIIVLVVCP 164
Query: 186 SEEKAAQCYNAAQYIIHDAELKSAKNCASAT---SEQ---SNSSIGLMIGTPCEVLQYIQ 239
+ E A Q A ++ + T +EQ S +++ TP + +I
Sbjct: 165 TRELACQAAAEANILLKYHPSIGVQVVIGGTKLPTEQRRLQKSPCQILVATPGRLKDHID 224
Query: 240 EGNVVPAEL---RYLVLDGMDCLLNSGHSPEIHKILKPLQDHGSTSTVKRLQTILAISTI 296
+ L + LVLD D LL+ G EI +I+ + K+ QT L +T+
Sbjct: 225 NTSGFATRLMGVKVLVLDEADHLLDMGFRREIERII--------AAVPKQRQTFLFSATV 276
Query: 297 AEVLGEESPLVKRLERDH 314
++ + + + L+RDH
Sbjct: 277 SDEVRQICHVA--LKRDH 292
>AT5G14610.2 | Symbols: | DEAD box RNA helicase family protein |
chr5:4711271-4714713 FORWARD LENGTH=645
Length = 645
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 79/174 (45%), Gaps = 7/174 (4%)
Query: 103 NFKELGVSEELVEVMDGIGEFVPSEIQCVVIPAILEGKSVLLSSPSDHDRTLAYLLPLIQ 162
+F+ G+ EL+ + G PS IQ P ++ + ++ + + +TL YL+P
Sbjct: 162 SFEATGLPNELLREVYSAGFSAPSPIQAQSWPIAMQNRDIVAIAKTGSGKTLGYLIPGFM 221
Query: 163 LLRRDRELLSSNSKHPRAIVLCASEEKAAQCYNAAQYIIHDAELKSAKNCASATS----E 218
L+R + + + P +VL + E A Q A +++ A A +
Sbjct: 222 HLQR---IHNDSRMGPTILVLSPTRELATQIQVEALKFGKSSKISCACLYGGAPKGPQLK 278
Query: 219 QSNSSIGLMIGTPCEVLQYIQEGNVVPAELRYLVLDGMDCLLNSGHSPEIHKIL 272
+ + +++ TP + ++ + ++ YLVLD D +L+ G P+I KI+
Sbjct: 279 EIERGVDIVVATPGRLNDILEMKRISLHQVSYLVLDEADRMLDMGFEPQIRKIV 332
>AT3G09720.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr3:2980483-2983268
REVERSE LENGTH=541
Length = 541
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/176 (23%), Positives = 78/176 (44%), Gaps = 21/176 (11%)
Query: 100 VVANFKELGVSEELVEVMDGIGEFVPSEIQCVVIPAILEGKSVLLSSPSDHDRTLAYLLP 159
++ N ELG E P+ IQ IP +L G+ +P+ +T A++ P
Sbjct: 152 ILRNLAELGFKE-------------PTPIQRQAIPILLSGRECFACAPTGSGKTFAFICP 198
Query: 160 LIQLLRRDRELLSSNSKHPRAIVLCASEEKAAQCYNAAQYIIHDAE--LKSAKNCASATS 217
++ L+R ++ RA++L + E AAQ + +I + ++ T+
Sbjct: 199 MLIKLKR------PSTDGIRAVILSPARELAAQTAREGKKLIKGSNFHIRLMTKPLVKTA 252
Query: 218 EQSNSSIGLMIGTPCEVLQYIQEGNVVPAELRYLVLDGMDCLLNSGHSPEIHKILK 273
+ S ++I TP + + I+ + +++ YLVLD D L +I ++K
Sbjct: 253 DFSKLWCDVLISTPMRLKRAIKAKKIDLSKVEYLVLDESDKLFEQSLLKQIDCVVK 308
>AT1G77030.1 | Symbols: | hydrolases, acting on acid anhydrides, in
phosphorus-containing anhydrides;ATP-dependent
helicases;nucleic acid binding;ATP binding;RNA
binding;helicases | chr1:28947887-28951526 REVERSE
LENGTH=845
Length = 845
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/204 (21%), Positives = 90/204 (44%), Gaps = 18/204 (8%)
Query: 104 FKELGVSEELVEVMDGIGEFVPSEIQCVVIPAILEGKSVLLSSPSDHDRTLAYLLPLIQL 163
F+ L + + + G VP+ IQ +P IL G V+ + + +T A+L+P+++
Sbjct: 30 FESLNLGPNVFNAIKKKGYKVPTPIQRKTMPLILSGVDVVAMARTGSGKTAAFLIPMLEK 89
Query: 164 LRRDRELLSSNSKHPRAIVLCASEEKAAQCYNAAQYIIHDAELKSA----KNCASATSEQ 219
L++ RA++L + + A Q + + +L+ + + E+
Sbjct: 90 LKQ-----HVPQGGVRALILSPTRDLAEQTLKFTKELGKFTDLRVSLLVGGDSMEDQFEE 144
Query: 220 SNSSIGLMIGTPCEVLQYIQE-GNVVPAELRYLVLDGMDCLLNSGHSPEIHKILKPLQDH 278
++I TP ++ + E ++ + Y+V D D L G + ++H+IL L ++
Sbjct: 145 LTKGPDVIIATPGRLMHLLSEVDDMTLRTVEYVVFDEADSLFGMGFAEQLHQILTQLSEN 204
Query: 279 GSTSTVKRLQTILAISTIAEVLGE 302
QT+L +T+ L E
Sbjct: 205 --------RQTLLFSATLPSALAE 220
>AT1G51380.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr1:19047960-19049967 FORWARD LENGTH=392
Length = 392
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 86/180 (47%), Gaps = 13/180 (7%)
Query: 101 VANFKELGVSEELVEVMDGIGEFVPSEIQCVVIPAILEGKSVLLSSPSDHDRTLAYLLPL 160
+ +F ++G++++++ + G PSEIQ + IL+G+ V+ + S +T + +
Sbjct: 21 IKSFDDMGMNDKVLRGVYDYGYKKPSEIQQRALVPILKGRDVIAQAQSGTGKTSMIAISV 80
Query: 161 IQLLRRDRELLSSNSKHPRAIVLCASEEKAAQCYNAAQYIIHDAELKSAKNCASATS--- 217
Q +++ +S+ + +VL S E A+Q Q I ++ A C S
Sbjct: 81 CQ-------IVNISSRKVQVLVLSPSRELASQTEKTIQAIGAHTNIQ-AHACIGGKSIGE 132
Query: 218 --EQSNSSIGLMIGTPCEVLQYIQEGNVVPAELRYLVLDGMDCLLNSGHSPEIHKILKPL 275
++ + + GTP V I+ G++ ++ LVLD D +L+ G +I+ + + L
Sbjct: 133 DIKKLERGVHAVSGTPGRVYDMIKRGSLQTKAVKLLVLDESDEMLSKGLKDQIYDVYRAL 192
>AT5G54910.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr5:22298668-22301719 REVERSE LENGTH=739
Length = 739
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/194 (22%), Positives = 87/194 (44%), Gaps = 8/194 (4%)
Query: 101 VANFKELGVSEELVEVMDGIGEFVPSEIQCVVIPAILEGKSVLLSSPSDHDRTLAYLLPL 160
V F +L +S++ + +++Q IP L G+ +L ++ + +TLA+++P+
Sbjct: 70 VRKFAQLPISDKTKRGLKDAKYVDMTDVQSAAIPHALCGRDILGAARTGSGKTLAFVIPI 129
Query: 161 IQLLRRDRELLSSNSKHPRAIVLCASEEKAAQCYN----AAQYIIHDAELKSAKNCASAT 216
++ L R+R S I++ + E AAQ + ++ A L
Sbjct: 130 LEKLHRER---WSPEDGVGCIIISPTRELAAQTFGVLNKVGKFHKFSAGLLIGGREGVDV 186
Query: 217 SEQSNSSIGLMIGTPCEVLQYIQEG-NVVPAELRYLVLDGMDCLLNSGHSPEIHKILKPL 275
++ + +++ P +LQ++ E N +L+ L+LD D +L+S ++ I+ L
Sbjct: 187 EKERVHEMNILVCAPGRLLQHMDETPNFECPQLQILILDEADRVLDSAFKGQLDPIISQL 246
Query: 276 QDHGSTSTVKRLQT 289
H T QT
Sbjct: 247 PKHRQTLLFSATQT 260
>AT5G63120.2 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr5:25318967-25322071
REVERSE LENGTH=591
Length = 591
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/175 (22%), Positives = 80/175 (45%), Gaps = 10/175 (5%)
Query: 104 FKELGVSEELVEVMDGIGEFVPSEIQCVVIPAILEGKSVLLSSPSDHDRTLAYLLPLIQL 163
F++ + ++E + +G P+ IQ P L+G+ ++ + + +TLAYLLP +
Sbjct: 167 FQDANFPDNILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVH 226
Query: 164 LRRDRELLSSNSKHPRAIVLCASEEKAAQCYNAAQYIIHDAELKSAKNCASATSEQS--- 220
+ L + P ++L + E A Q ++ + ++S C + +
Sbjct: 227 VSAQPRLGQDDG--PIVLILAPTRELAVQIQEESRKFGLRSGVRS--TCIYGGAPKGPQI 282
Query: 221 ---NSSIGLMIGTPCEVLQYIQEGNVVPAELRYLVLDGMDCLLNSGHSPEIHKIL 272
+ ++I TP ++ ++ + + YLVLD D +L+ G P+I KI+
Sbjct: 283 RDLRRGVEIVIATPGRLIDMLECQHTNLKRVTYLVLDEADRMLDMGFEPQIRKIV 337
>AT2G23350.1 | Symbols: PAB4, PABP4 | poly(A) binding protein 4 |
chr2:9943209-9946041 FORWARD LENGTH=662
Length = 662
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 46/73 (63%), Gaps = 4/73 (5%)
Query: 283 TVKRLQTILAISTIAE---VLGEE-SPLVKRLERDHAGNISAMSLEMEPTEVFDFSESLE 338
+ +L T LA +T A+ +LGE PLV ++E +HA ++ M LEM+ TEV ES E
Sbjct: 558 SAGQLATSLANATPAQQRTLLGESLYPLVDQIESEHAAKVTGMLLEMDQTEVLHLLESPE 617
Query: 339 ALRKKVAEAMNSL 351
AL KV+EA++ L
Sbjct: 618 ALNAKVSEALDVL 630
>AT5G63120.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr5:25319798-25322071
REVERSE LENGTH=484
Length = 484
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/175 (22%), Positives = 79/175 (45%), Gaps = 10/175 (5%)
Query: 104 FKELGVSEELVEVMDGIGEFVPSEIQCVVIPAILEGKSVLLSSPSDHDRTLAYLLPLIQL 163
F++ + ++E + +G P+ IQ P L+G+ ++ + + +TLAYLLP +
Sbjct: 167 FQDANFPDNILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVH 226
Query: 164 LRRDRELLSSNSKHPRAIVLCASEEKAAQCYNAAQYIIHDAELKSAKNCASATSEQS--- 220
+ L P ++L + E A Q ++ + ++S C + +
Sbjct: 227 VSAQPRL--GQDDGPIVLILAPTRELAVQIQEESRKFGLRSGVRS--TCIYGGAPKGPQI 282
Query: 221 ---NSSIGLMIGTPCEVLQYIQEGNVVPAELRYLVLDGMDCLLNSGHSPEIHKIL 272
+ ++I TP ++ ++ + + YLVLD D +L+ G P+I KI+
Sbjct: 283 RDLRRGVEIVIATPGRLIDMLECQHTNLKRVTYLVLDEADRMLDMGFEPQIRKIV 337
>AT3G19760.1 | Symbols: EIF4A-III | eukaryotic initiation factor
4A-III | chr3:6863790-6866242 FORWARD LENGTH=408
Length = 408
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/180 (22%), Positives = 84/180 (46%), Gaps = 13/180 (7%)
Query: 101 VANFKELGVSEELVEVMDGIGEFVPSEIQCVVIPAILEGKSVLLSSPSDHDRTLAYLLPL 160
+ +F ++G+ E+++ + G PS IQ + IL+G+ V+ + S +T L +
Sbjct: 34 ITSFNDMGIKEDVLRGVYEYGFEKPSAIQQRAVMPILQGRDVIAQAQSGTGKTSMIALSV 93
Query: 161 IQLLRRDRELLSSNSKHPRAIVLCASEEKAAQCYNAAQYIIHDAELKSAKNCASATS--- 217
Q ++ ++S+ +A++L + E A Q Q I A ++ A C S
Sbjct: 94 CQ-------VVDTSSREVQALILSPTRELATQTEKTIQAIGLHANIQ-AHACIGGNSVGE 145
Query: 218 --EQSNSSIGLMIGTPCEVLQYIQEGNVVPAELRYLVLDGMDCLLNSGHSPEIHKILKPL 275
+ + ++ GTP V I+ ++ ++ L+LD D +L+ G +I+ + + L
Sbjct: 146 DIRKLEHGVHVVSGTPGRVCDMIKRRSLRTRAIKLLILDESDEMLSRGFKDQIYDVYRYL 205
>AT5G05450.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr5:1612077-1615195
FORWARD LENGTH=593
Length = 593
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 74/174 (42%), Gaps = 18/174 (10%)
Query: 128 IQCVVIPAILEGKSVLLSSPSDHDRTLAYLLPLIQLLRRDRELLSSNSKHPR-----AIV 182
+Q IP + K V + + + +TLA+++PL+++LRR S S P+ ++
Sbjct: 42 VQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRR------STSFPPKPHQVMGVI 95
Query: 183 LCASEEKAAQCYNAAQYI------IHDAELKSAKNCASATSEQSNSSIGLMIGTPCEVLQ 236
+ + E + Q YN AQ ++ L + + ++IGTP +
Sbjct: 96 ISPTRELSTQIYNVAQPFVSTLANVNSVLLVGGREVKADMKIIEEEGCNVLIGTPGRLSD 155
Query: 237 YIQEGNVVPAE-LRYLVLDGMDCLLNSGHSPEIHKILKPLQDHGSTSTVKRLQT 289
++ ++ L L+LD D LL G +++ I+ L T QT
Sbjct: 156 IMERMEILDFRNLEILILDEADRLLEMGFQRQVNYIISRLPKQRRTGLFSATQT 209
>AT5G62190.1 | Symbols: PRH75 | DEAD box RNA helicase (PRH75) |
chr5:24980542-24983879 REVERSE LENGTH=671
Length = 671
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/190 (22%), Positives = 87/190 (45%), Gaps = 23/190 (12%)
Query: 118 DGIGEFVPSEIQCVVIPAILEGKSVLLSSPSDHDRTLAYLLPLIQLL-----RRDRELLS 172
+GI P IQ +L+G ++ + + +TLA++LP+++ L + R++
Sbjct: 114 NGIEALFP--IQASTFDMVLDGADLVGRARTGQGKTLAFVLPILESLVNGPAKSKRKM-- 169
Query: 173 SNSKHPRAIVLCASEEKAAQCYNAAQYIIHDAELKSAKNCASATSE------QSNSSIGL 226
+ P +VL + E A Q AA + + L + C + + +
Sbjct: 170 GYGRSPSVLVLLPTRELAKQV--AADFDAYGGSLGLSSCCLYGGDSYPVQEGKLKRGVDI 227
Query: 227 MIGTPCEVLQYIQEGNVVPAELRYLVLDGMDCLLNSGHSPEIHKILKPLQDHGSTSTVKR 286
++GTP + +I+ N+ + L++ VLD D +L G ++ IL ++D +
Sbjct: 228 VVGTPGRIKDHIERQNLDFSYLQFRVLDEADEMLRMGFVEDVELILGKVEDS------TK 281
Query: 287 LQTILAISTI 296
+QT+L +T+
Sbjct: 282 VQTLLFSATL 291
>AT5G63630.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr5:25472598-25476402
REVERSE LENGTH=788
Length = 788
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 88/197 (44%), Gaps = 20/197 (10%)
Query: 128 IQCVVIPAILEGKSVLLSSPSDHDRTLAYLLPLIQLLRRDRELLSSNSKHP-RAIVLCAS 186
+Q +P IL+GK VL + + +T+A+LLP I+++ + N + P A+V+C +
Sbjct: 346 VQEATLPIILKGKDVLAKAKTGTGKTVAFLLPSIEVVVKSPPTSPDNKRPPILALVICPT 405
Query: 187 EEKAAQCYNAAQYIIHDAELKSAKNCASATS---EQSNSSIG---LMIGTPCEVLQYIQE 240
E A Q A ++ + T EQ +++ TP + +I+
Sbjct: 406 RELANQAATEANTLLKYHPSIGVQVVIGGTRLGLEQKRMQTNPCQILVATPGRLKDHIEN 465
Query: 241 GNVVPAEL---RYLVLDGMDCLLNSGHSPEIHKILKPLQDHGSTSTVKRLQTILAISTIA 297
L + LVLD D LL+ G +I +I+ ++ K QT L +T+
Sbjct: 466 TPGFATRLKGVKVLVLDEADHLLDMGFRKDIERII--------SAVPKERQTFLFSATVP 517
Query: 298 EVLGEESPLVKRLERDH 314
E + + LV L RDH
Sbjct: 518 EEV-RQICLVA-LRRDH 532
>AT4G33370.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr4:16069669-16071405 REVERSE LENGTH=542
Length = 542
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 41/184 (22%), Positives = 85/184 (46%), Gaps = 13/184 (7%)
Query: 101 VANFKELGVSEELVEVMDGIGEFVPSEIQCVVIPAILEGKSVLLSSPSDHDRTLAYLLPL 160
+ NF ++ L+ ++ G P+ IQ +P +L G+ ++ + + +TL ++LP+
Sbjct: 96 IKNFMDMKFPSPLLRMLKDKGIMHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPM 155
Query: 161 IQLLRRDRELLS-SNSKHPRAIVLCASEEKAAQCYNAA-QYI---IHDA--ELKSAKNCA 213
I L ++ ++ + + P A+V+C S E A Q Y+ Q++ + D L+S C
Sbjct: 156 IILALQEEIMMPIAAGEGPIALVICPSRELAKQTYDVVEQFVASLVEDGYPRLRSLL-CI 214
Query: 214 SATSEQSN-----SSIGLMIGTPCEVLQYIQEGNVVPAELRYLVLDGMDCLLNSGHSPEI 268
+S + +++ TP + + + + R L LD D L++ G +I
Sbjct: 215 GGVDMRSQLDVVKKGVHIVVATPGRLKDILAKKKMSLDACRLLTLDEADRLVDLGFEDDI 274
Query: 269 HKIL 272
+
Sbjct: 275 RHVF 278
>AT3G16840.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr3:5738020-5743042
REVERSE LENGTH=826
Length = 826
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 86/196 (43%), Gaps = 28/196 (14%)
Query: 125 PSEIQ--CVVIPAILEGKSVLLSSPSDHDRTLAYLLPLIQLLRRDRELLS---------- 172
P++IQ C + A +GK V+ ++ + +TLA+ LP++Q L +RE +
Sbjct: 213 PTKIQKACFNVAA-YQGKDVIGAAETGSGKTLAFGLPILQRLLDEREKVGKLYALKGEEA 271
Query: 173 ---SNSKHPRAIVLCASEEKAAQCYNAAQYIIHDAELKSAKNCASATSEQSNSSIG---- 225
+ + RA+++ + E A Q + + +K SE+ +
Sbjct: 272 QKYAADGYLRALIITPTRELALQVTEHLENAAKNLSVKVVPIVGGMFSEKQERRLKEKPE 331
Query: 226 LMIGTPCEVLQYIQEGNVVPAELR---YLVLDGMDCLLNSGHSPEIHKILK--PLQD--- 277
+++ TP + + + G EL + VLD D ++ GH E+ IL P+ D
Sbjct: 332 IVVATPGRLWELMSAGEKHLVELHSLSFFVLDEADRMVERGHFRELQSILDLLPVTDKPN 391
Query: 278 HGSTSTVKRLQTILAI 293
G T TVK T+L +
Sbjct: 392 EGKTQTVKSNDTVLNV 407