Miyakogusa Predicted Gene

Lj0g3v0265109.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0265109.1 tr|G7IKW7|G7IKW7_MEDTR SNW domain-containing
protein OS=Medicago truncatula GN=MTR_2g030450 PE=4
SV=,85.93,0,seg,NULL; SKIP_SNW,SKI-interacting protein SKIP, SNW
domain; NUCLEAR PROTEIN SKIP-RELATED,SKI-intera,CUFF.17517.1
         (523 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G77180.2 | Symbols: SKIP | chromatin protein family | chr1:28...   620   e-178
AT1G77180.1 | Symbols: SKIP | chromatin protein family | chr1:28...   620   e-178
AT1G77180.3 | Symbols: SKIP | chromatin protein family | chr1:28...   410   e-114

>AT1G77180.2 | Symbols: SKIP | chromatin protein family |
           chr1:28999791-29001632 REVERSE LENGTH=613
          Length = 613

 Score =  620 bits (1599), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 337/540 (62%), Positives = 386/540 (71%), Gaps = 30/540 (5%)

Query: 1   MGRDKSSKTGSKILPVTVDAHGNVAYDAIVKQNENAKKIVYTQQKDLIPKILKNX--XXX 58
           MG++KS+K G+K LPVTVDA GNV +DAIV+QNEN++KIVY+Q KD+IPK LKN      
Sbjct: 81  MGKNKSNKPGAKTLPVTVDAQGNVVFDAIVRQNENSRKIVYSQHKDIIPKFLKNEGDLGT 140

Query: 59  XXXXXXXVQKEIEETMQETKAALEKIVNVRLSAAQPKNVAKQSSDSKYIKYKPSQQSAAF 118
                  +QKEI+ET +ETKAA+EKIVNVRLSAAQP N+A+QS DS+YIKYKPSQQS+AF
Sbjct: 141 VVDEEEELQKEIQETAEETKAAIEKIVNVRLSAAQPSNIARQSGDSQYIKYKPSQQSSAF 200

Query: 119 NSGAKERVIRMVEMPVDPLEPPKFKHKRVPKAXXXXXXXXXXXXXXXXTVKDQQDWKIPP 178
           NSGAKER+IRMVEMPVDPL+PPKFKHKRVP+A                TVKDQQDWKIPP
Sbjct: 201 NSGAKERIIRMVEMPVDPLDPPKFKHKRVPRASGSPPVPVMHSPPRPVTVKDQQDWKIPP 260

Query: 179 CISNWKNPKGYTIPLDKRLAADGRGLQEVQINDNFAKLSESLYVAEQKAREAVAMRSKVX 238
           CISNWKNPKGYTIPLDKRLAADGRGLQ+VQINDNFAKLSE+LYVAEQKAREAV+MRSKV 
Sbjct: 261 CISNWKNPKGYTIPLDKRLAADGRGLQDVQINDNFAKLSEALYVAEQKAREAVSMRSKVQ 320

Query: 239 XXXXXXXXXXXXXXXXXXAQKARSERTGXXXXXXXXXXXXXXXXXXXXDADMRGDYEH-- 296
                             AQKARSERTG                      D RGDY++  
Sbjct: 321 KEMVMKDKERKEQELRALAQKARSERTGAAMSMPVSSDRGRSES-----VDPRGDYDNYD 375

Query: 297 ---------PREREKNFPKESREEREDXXXXXXXXXXXXXXXXXXXXXXAKDAAMGKKSK 347
                       +E    +E R +RE                       AKDAAMGKKSK
Sbjct: 376 QDRGREREREEPQETREEREKRIQRE------KIREERRRERERERRLDAKDAAMGKKSK 429

Query: 348 ITRDRDRDISEKVALGMAT--AKTGTEVMYDERLFNQDQGMSSGFATDDQYNVYDKGLFT 405
           ITRDRDRDISEKVALGMA+   K G EVMYD+RLFNQD+GM SGFA DDQYN+YDKGLFT
Sbjct: 430 ITRDRDRDISEKVALGMASTGGKGGGEVMYDQRLFNQDKGMDSGFAADDQYNLYDKGLFT 489

Query: 406 AQPTLSTLYRPKKDVDNETYGGADEQLEKIMKTDRFKPDKAFSGASERAGP-RDRPVEFE 464
           AQPTLSTLY+PKKD D E YG ADEQL+KI  T+RFKPDKAF+GASER G  RDRPVEFE
Sbjct: 490 AQPTLSTLYKPKKDNDEEMYGNADEQLDKIKNTERFKPDKAFTGASERVGSKRDRPVEFE 549

Query: 465 -NEEADPFGLDQFLTEVKKGKKAMEKVGGGGTMKA--SAGSSMRDGYEGGSSRTRIGFER 521
             EE DPFGL+++++++KKGKK ++K+G GGTM+A    GSS RD   GGS RT+I FER
Sbjct: 550 KEEEQDPFGLEKWVSDLKKGKKPLDKIGSGGTMRASGGGGSSSRDDDHGGSGRTKINFER 609


>AT1G77180.1 | Symbols: SKIP | chromatin protein family |
           chr1:28999791-29001632 REVERSE LENGTH=613
          Length = 613

 Score =  620 bits (1599), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 337/540 (62%), Positives = 386/540 (71%), Gaps = 30/540 (5%)

Query: 1   MGRDKSSKTGSKILPVTVDAHGNVAYDAIVKQNENAKKIVYTQQKDLIPKILKNX--XXX 58
           MG++KS+K G+K LPVTVDA GNV +DAIV+QNEN++KIVY+Q KD+IPK LKN      
Sbjct: 81  MGKNKSNKPGAKTLPVTVDAQGNVVFDAIVRQNENSRKIVYSQHKDIIPKFLKNEGDLGT 140

Query: 59  XXXXXXXVQKEIEETMQETKAALEKIVNVRLSAAQPKNVAKQSSDSKYIKYKPSQQSAAF 118
                  +QKEI+ET +ETKAA+EKIVNVRLSAAQP N+A+QS DS+YIKYKPSQQS+AF
Sbjct: 141 VVDEEEELQKEIQETAEETKAAIEKIVNVRLSAAQPSNIARQSGDSQYIKYKPSQQSSAF 200

Query: 119 NSGAKERVIRMVEMPVDPLEPPKFKHKRVPKAXXXXXXXXXXXXXXXXTVKDQQDWKIPP 178
           NSGAKER+IRMVEMPVDPL+PPKFKHKRVP+A                TVKDQQDWKIPP
Sbjct: 201 NSGAKERIIRMVEMPVDPLDPPKFKHKRVPRASGSPPVPVMHSPPRPVTVKDQQDWKIPP 260

Query: 179 CISNWKNPKGYTIPLDKRLAADGRGLQEVQINDNFAKLSESLYVAEQKAREAVAMRSKVX 238
           CISNWKNPKGYTIPLDKRLAADGRGLQ+VQINDNFAKLSE+LYVAEQKAREAV+MRSKV 
Sbjct: 261 CISNWKNPKGYTIPLDKRLAADGRGLQDVQINDNFAKLSEALYVAEQKAREAVSMRSKVQ 320

Query: 239 XXXXXXXXXXXXXXXXXXAQKARSERTGXXXXXXXXXXXXXXXXXXXXDADMRGDYEH-- 296
                             AQKARSERTG                      D RGDY++  
Sbjct: 321 KEMVMKDKERKEQELRALAQKARSERTGAAMSMPVSSDRGRSES-----VDPRGDYDNYD 375

Query: 297 ---------PREREKNFPKESREEREDXXXXXXXXXXXXXXXXXXXXXXAKDAAMGKKSK 347
                       +E    +E R +RE                       AKDAAMGKKSK
Sbjct: 376 QDRGREREREEPQETREEREKRIQRE------KIREERRRERERERRLDAKDAAMGKKSK 429

Query: 348 ITRDRDRDISEKVALGMAT--AKTGTEVMYDERLFNQDQGMSSGFATDDQYNVYDKGLFT 405
           ITRDRDRDISEKVALGMA+   K G EVMYD+RLFNQD+GM SGFA DDQYN+YDKGLFT
Sbjct: 430 ITRDRDRDISEKVALGMASTGGKGGGEVMYDQRLFNQDKGMDSGFAADDQYNLYDKGLFT 489

Query: 406 AQPTLSTLYRPKKDVDNETYGGADEQLEKIMKTDRFKPDKAFSGASERAGP-RDRPVEFE 464
           AQPTLSTLY+PKKD D E YG ADEQL+KI  T+RFKPDKAF+GASER G  RDRPVEFE
Sbjct: 490 AQPTLSTLYKPKKDNDEEMYGNADEQLDKIKNTERFKPDKAFTGASERVGSKRDRPVEFE 549

Query: 465 -NEEADPFGLDQFLTEVKKGKKAMEKVGGGGTMKA--SAGSSMRDGYEGGSSRTRIGFER 521
             EE DPFGL+++++++KKGKK ++K+G GGTM+A    GSS RD   GGS RT+I FER
Sbjct: 550 KEEEQDPFGLEKWVSDLKKGKKPLDKIGSGGTMRASGGGGSSSRDDDHGGSGRTKINFER 609


>AT1G77180.3 | Symbols: SKIP | chromatin protein family |
           chr1:28999791-29001632 REVERSE LENGTH=511
          Length = 511

 Score =  410 bits (1054), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 226/379 (59%), Positives = 256/379 (67%), Gaps = 24/379 (6%)

Query: 1   MGRDKSSKTGSKILPVTVDAHGNVAYDAIVKQNENAKKIVYTQQKDLIPKILKNX--XXX 58
           MG++KS+K G+K LPVTVDA GNV +DAIV+QNEN++KIVY+Q KD+IPK LKN      
Sbjct: 81  MGKNKSNKPGAKTLPVTVDAQGNVVFDAIVRQNENSRKIVYSQHKDIIPKFLKNEGDLGT 140

Query: 59  XXXXXXXVQKEIEETMQETKAALEKIVNVRLSAAQPKNVAKQSSDSKYIKYKPSQQSAAF 118
                  +QKEI+ET +ETKAA+EKIVNVRLSAAQP N+A+QS DS+YIKYKPSQQS+AF
Sbjct: 141 VVDEEEELQKEIQETAEETKAAIEKIVNVRLSAAQPSNIARQSGDSQYIKYKPSQQSSAF 200

Query: 119 NSGAKERVIRMVEMPVDPLEPPKFKHKRVPKAXXXXXXXXXXXXXXXXTVKDQQDWKIPP 178
           NSGAKER+IRMVEMPVDPL+PPKFKHKRVP+A                TVKDQQDWKIPP
Sbjct: 201 NSGAKERIIRMVEMPVDPLDPPKFKHKRVPRASGSPPVPVMHSPPRPVTVKDQQDWKIPP 260

Query: 179 CISNWKNPKGYTIPLDKRLAADGRGLQEVQINDNFAKLSESLYVAEQKAREAVAMRSKVX 238
           CISNWKNPKGYTIPLDKRLAADGRGLQ+VQINDNFAKLSE+LYVAEQKAREAV+MRSKV 
Sbjct: 261 CISNWKNPKGYTIPLDKRLAADGRGLQDVQINDNFAKLSEALYVAEQKAREAVSMRSKVQ 320

Query: 239 XXXXXXXXXXXXXXXXXXAQKARSERTGXXXXXXXXXXXXXXXXXXXXDADMRGDYEH-- 296
                             AQKARSERTG                      D RGDY++  
Sbjct: 321 KEMVMKDKERKEQELRALAQKARSERTGAAMSMPVSSDRGRSES-----VDPRGDYDNYD 375

Query: 297 ---------PREREKNFPKESREEREDXXXXXXXXXXXXXXXXXXXXXXAKDAAMGKKSK 347
                       +E    +E R +RE                       AKDAAMGKKSK
Sbjct: 376 QDRGREREREEPQETREEREKRIQRE------KIREERRRERERERRLDAKDAAMGKKSK 429

Query: 348 ITRDRDRDISEKVALGMAT 366
           ITRDRDRDISEKVALGMA+
Sbjct: 430 ITRDRDRDISEKVALGMAS 448



 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 31/55 (56%), Positives = 43/55 (78%), Gaps = 2/55 (3%)

Query: 469 DPFGLDQFLTEVKKGKKAMEKVGGGGTMKA--SAGSSMRDGYEGGSSRTRIGFER 521
           DPFGL+++++++KKGKK ++K+G GGTM+A    GSS RD   GGS RT+I FER
Sbjct: 453 DPFGLEKWVSDLKKGKKPLDKIGSGGTMRASGGGGSSSRDDDHGGSGRTKINFER 507