Miyakogusa Predicted Gene

Lj0g3v0265009.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0265009.1 tr|A9PAL7|A9PAL7_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_595591 PE=2
SV=1,35.57,3e-19,seg,NULL; UGPI4_ARATH_Q84MC0;,NULL,CUFF.17492.1
         (199 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G06035.1 | Symbols:  | Glycoprotein membrane precursor GPI-an...   208   2e-54
AT5G19250.1 | Symbols:  | Glycoprotein membrane precursor GPI-an...   206   1e-53
AT1G54860.1 | Symbols:  | Glycoprotein membrane precursor GPI-an...   151   3e-37
AT5G19240.1 | Symbols:  | Glycoprotein membrane precursor GPI-an...   144   3e-35
AT5G19230.1 | Symbols:  | Glycoprotein membrane precursor GPI-an...   131   3e-31

>AT3G06035.1 | Symbols:  | Glycoprotein membrane precursor
           GPI-anchored | chr3:1823172-1824110 REVERSE LENGTH=200
          Length = 200

 Score =  208 bits (530), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 96/139 (69%), Positives = 118/139 (84%)

Query: 31  DEKDNLYQGINKYRASINLKALAKNENADCLADQIAEQFKNQPCTNTTGANTVPGTEPQF 90
           DE+D L  GIN YR + NL  L+KNENA+CLAD+IA+QFKN+PCTN TG+ TVPGTEPQF
Sbjct: 27  DEEDILLTGINSYRTTQNLTILSKNENAECLADEIADQFKNKPCTNDTGSATVPGTEPQF 86

Query: 91  SNYPNLLAKCHLAISDTQDRTVMPACVPNLVPSLVLSNFTGSLYSDSLNDTKYTGIGIGS 150
           +NYP +LAKCHL +SDT+D ++MPACVP L  +LVL+NFT S YS SLND+K+TGIGIG 
Sbjct: 87  ANYPQILAKCHLNVSDTRDGSIMPACVPRLESNLVLTNFTKSQYSMSLNDSKFTGIGIGK 146

Query: 151 EDNWIVVVLTTNTPAGNFA 169
           ED+WIVVVLTTNTP G+++
Sbjct: 147 EDDWIVVVLTTNTPEGSYS 165


>AT5G19250.1 | Symbols:  | Glycoprotein membrane precursor
           GPI-anchored | chr5:6471983-6472808 FORWARD LENGTH=196
          Length = 196

 Score =  206 bits (523), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 100/158 (63%), Positives = 123/158 (77%)

Query: 31  DEKDNLYQGINKYRASINLKALAKNENADCLADQIAEQFKNQPCTNTTGANTVPGTEPQF 90
           DE+D L  GIN YRAS+NL  L  N NA+CLAD+IA+QFKNQPCTNTTG+ +VPGT P F
Sbjct: 28  DEEDVLLTGINSYRASLNLTTLIHNHNAECLADEIADQFKNQPCTNTTGSASVPGTTPGF 87

Query: 91  SNYPNLLAKCHLAISDTQDRTVMPACVPNLVPSLVLSNFTGSLYSDSLNDTKYTGIGIGS 150
            N PNLL+KC L  + T+D  ++PACVPNL PSLVL+NFT S YS  LND+K+TGIGIGS
Sbjct: 88  PNLPNLLSKCRLNPTVTRDGAILPACVPNLDPSLVLTNFTMSQYSKDLNDSKFTGIGIGS 147

Query: 151 EDNWIVVVLTTNTPAGNFAPYSSNGANLISKMGLIHCS 188
           +DNWIVVVLTT+TP G+++P S++GA      GL+  S
Sbjct: 148 DDNWIVVVLTTSTPEGSYSPASNSGAFAFGVNGLVSSS 185


>AT1G54860.1 | Symbols:  | Glycoprotein membrane precursor
           GPI-anchored | chr1:20457522-20458434 REVERSE LENGTH=200
          Length = 200

 Score =  151 bits (382), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 70/163 (42%), Positives = 114/163 (69%), Gaps = 6/163 (3%)

Query: 29  ADDEKDNLYQGINKYRASINLKALAKNENADCLADQIAEQFKNQPCTNTTGANTV-PGT- 86
           ++  +DNL QG+N YR +  +   AKNE ADC+AD+IA++ ++QPCTN T A+TV PG+ 
Sbjct: 28  SNQAEDNLLQGLNSYRTAQRVPPFAKNEKADCVADEIADKLEDQPCTNHTTASTVTPGSV 87

Query: 87  EPQFSNYPNLLAKCHLAISDTQDRTVMPACVPNLVPSLVLSNFTGSLYSDSLNDTKYTGI 146
            P+ +NY ++L++C +  + T+D  ++P C+PN +P+L L+N+T + Y+  LND++Y G 
Sbjct: 88  PPRLTNYQDILSECKIDPNTTRDGLILPVCIPNRIPTLALTNYTQTGYARYLNDSRYVGA 147

Query: 147 GIGSEDNWIVVVLTTNTPAGNF----APYSSNGANLISKMGLI 185
           G+GSE  W+VVVLTT+TP G+F    A   +    +++ +GL+
Sbjct: 148 GVGSEKEWMVVVLTTSTPGGSFTAGVAAGKATSVRVMAGLGLM 190


>AT5G19240.1 | Symbols:  | Glycoprotein membrane precursor
           GPI-anchored | chr5:6470209-6470981 FORWARD LENGTH=199
          Length = 199

 Score =  144 bits (364), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 77/170 (45%), Positives = 111/170 (65%), Gaps = 6/170 (3%)

Query: 25  PTECADDEKDNLYQGINKYRASINLKALAKNENADCLADQIAEQFKNQPCTNTTGANTVP 84
           P     D ++ L+   N+YR S+NL  L KN+NA+CLAD++ +Q +NQPCTNTTG+ +VP
Sbjct: 22  PVLSNTDGENLLFTVFNQYRESVNLTNLKKNKNAECLADEVVDQLQNQPCTNTTGSASVP 81

Query: 85  GTEPQFSNYPNLLAKCHLAISDTQDRTVMPACVPNLVPSLVLSNFTGSLYSDSLNDTKYT 144
           GT+P   N+PNLLAKC L  + T+D  ++  C P    +  LS+F   L + +LND+K+T
Sbjct: 82  GTDPGIPNFPNLLAKCRLNTNVTRDGLILQVCAPKHHSTPDLSSFANVL-TKNLNDSKFT 140

Query: 145 GIGIG--SEDNWIVVVLTTNTPAGNFAPYSSNGANLISKMGLIHCSMLVL 192
           G G+G  S+  W+V VLTTNTP G+   YS++GA      GL+  S++ L
Sbjct: 141 GAGVGIDSDGIWLVTVLTTNTPGGS---YSNSGAFAFGVNGLVSSSLMFL 187


>AT5G19230.1 | Symbols:  | Glycoprotein membrane precursor
           GPI-anchored | chr5:6467636-6468337 FORWARD LENGTH=189
          Length = 189

 Score =  131 bits (330), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 71/140 (50%), Positives = 88/140 (62%), Gaps = 9/140 (6%)

Query: 30  DDEKDNLYQGINKYRASINLKALAKNENADCLADQIAEQFKNQPCTNTTGANTVPGTEPQ 89
           D E D L    NKYR  +NLK L KNENA+CLAD++ +Q KNQPCTNT  +  VPG    
Sbjct: 27  DGEDDLLLTVFNKYRTGLNLKTLTKNENAECLADEVVDQLKNQPCTNTNNSAPVPGN--- 83

Query: 90  FSNYPNLLAKCHLAISDTQDRTVMPACVPNLVPSLVLSNFTGSLYSDSLNDTKYTGIGIG 149
                NLLAKC L  +  +D  +M  C P    +  LSNF  S+   +LND+K TGIGIG
Sbjct: 84  -----NLLAKCSLNTTVVRDGVIMQVCFPKHDKNPDLSNFN-SVVLKNLNDSKITGIGIG 137

Query: 150 SEDNWIVVVLTTNTPAGNFA 169
           S D W+VV+LTTNTP G ++
Sbjct: 138 SGDIWVVVILTTNTPEGGYS 157