Miyakogusa Predicted Gene

Lj0g3v0264999.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0264999.1 tr|B9HZK5|B9HZK5_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_771071 PE=4
SV=1,34.64,0.0000000002,FBD,FBD; domain in FBox and BRCT domain
containing pl,FBD,CUFF.17463.1
         (169 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G54160.1 | Symbols:  | RNI-like superfamily protein | chr3:20...    51   5e-07

>AT3G54160.1 | Symbols:  | RNI-like superfamily protein |
           chr3:20053468-20055027 FORWARD LENGTH=434
          Length = 434

 Score = 50.8 bits (120), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 40/131 (30%), Positives = 68/131 (51%), Gaps = 7/131 (5%)

Query: 39  ECLAFLPTGKAINFGCGTMTNFLEKLPCLELLIFQSGIDLSGNHKEGNWTFD--PVPSCF 96
           E L  L     ++F    +   LEK P L+ L  Q+    + ++ + N   D   V S  
Sbjct: 297 ENLFHLSLSTEVDFCWNVLPILLEKSPNLKTLTIQALHYTTNHYGDENTVCDCLEVYSFL 356

Query: 97  SS-HLKTIKICKFRGTAGELLVVKSLLKSAEKLREMDLKCLHDEFVGGSARERSVLNELR 155
           SS H++ +KI +F+G  GE++ +K +L   EKL  ++L  +H + V G  ++  ++ +L 
Sbjct: 357 SSCHIEVLKITQFKGDIGEMVQIKHIL---EKLPSLELLEIHGQ-VKGDDKKLQIMLDLL 412

Query: 156 MLPRASINCKI 166
           M  RAS  CK+
Sbjct: 413 MFERASSECKV 423