Miyakogusa Predicted Gene

Lj0g3v0264869.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0264869.2 tr|A2Q3V3|A2Q3V3_MEDTR C-5 cytosine-specific DNA
methylase; Vacuolar protein sorting-associated prot,78.94,0,GB DEF:
VPS13-LIKE PROTEIN,NULL; VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN
(VPS13),Vacuolar protei,CUFF.17733.2
         (1277 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G24740.1 | Symbols:  | Protein of unknown function (DUF1162) ...  1182   0.0  

>AT5G24740.1 | Symbols:  | Protein of unknown function (DUF1162) |
            chr5:8470073-8489703 REVERSE LENGTH=3464
          Length = 3464

 Score = 1182 bits (3057), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 652/1319 (49%), Positives = 846/1319 (64%), Gaps = 75/1319 (5%)

Query: 1    MDENDEQRLPHYRHSNSSDSLNEQRSSGFTHHYITVQLDGASMPSDPISMDLVGLTCFEV 60
            +D +D   +P  R S    S +E  S    HHY+ VQLDG S  S P SMD +GL+ FEV
Sbjct: 1947 IDNSDTLLIPDRRRSQFGCSSSE--SGDAIHHYMKVQLDGTSFASPPHSMDRIGLSYFEV 2004

Query: 61   NFSKTY---DQNGQGGRMNSGATFVVPVVFDVSMLRYSKLIRIYSTVVLLNATSTPLELR 117
            +FSKT    D   +  +   G++FVVPVV++VS+ + SKLIR+YSTV++LN+TS PLELR
Sbjct: 2005 DFSKTSNSSDNVEKASKSGYGSSFVVPVVYEVSLQQQSKLIRVYSTVIILNSTSMPLELR 2064

Query: 118  FDIPFGVSPT--------------------ILDXXXXXXXXXXXXXXAEAGCVRWRPTGN 157
            FDIPFG+SP                     ILD              A++G +RWRP G+
Sbjct: 2065 FDIPFGISPKLPYLVDLNTIFYYSYAILFQILDPIFPGQEFPLPLHLAKSGRLRWRPLGD 2124

Query: 158  SYLWSEAHNLSNLLSITGDVGSLKSFMCYPSLPSSHPFRCCMXXXXXXX--------XXX 209
            SYLWSEAH++S +LS    +G  +SF CYP  PS  PFRCC+                  
Sbjct: 2125 SYLWSEAHSISKVLSQDSGIGFRRSFACYPCHPSHEPFRCCISVQSTSLPASFHINDLSA 2184

Query: 210  GRLKNNVSTDDAKR--YIHHLILSPPLVVYNYLPEEMLLISESGGVDHTLKVSEVDTSVY 267
            G     +   D  R  +IH + LS P VV N LP+ + L  ESGG+  T  + E  T  +
Sbjct: 2185 GNFGQQLHNLDQSREQFIHQVTLSTPFVVSNCLPDPISLSIESGGITQTASLPE--TPFH 2242

Query: 268  HIDPSHDLGLKICIDGFKCSDFKFPRLETFCSMAKFSETKFSFSETLILEPINSNGPVYV 327
            HIDPSHDL L+  ++G + S  KF R ETF + AKFS  KFS  ET+  +     G VYV
Sbjct: 2243 HIDPSHDLVLEFKLNGCRTSSLKFSRSETFSTEAKFSGGKFSQIETISFDSHVGGGSVYV 2302

Query: 328  TVEKVMDAYSGSRELIIFVPFILYNCMGFPLCVTETTGEANERGFVIPSYDDLGEKETFS 387
            + EK MDA  G+RE++IFVPF+LYNC G PL V++ T E      VIPS  +L E+    
Sbjct: 2303 SCEKTMDATCGAREVLIFVPFLLYNCTGTPLIVSDCTNETKGIYSVIPSCYNLIEQHFVQ 2362

Query: 388  YKKDGLSLLISNHEL-----RADVPCTPMNHLKNHTISCREDGGPNFVSYKRNSLLFGNY 442
             +K GL +L S  +L       D+PC+P +   ++T S  E               F + 
Sbjct: 2363 SRKVGLGILTSEKDLLDKAVMEDIPCSPSSSECSNTASSTER--------------FIDK 2408

Query: 443  HENLGRQQSKSDSVERLASTMRSSSQSTWKDSGPC---NNEPERVWPCMYSPSPNSSVND 499
            H     +Q    +  + ++ +R  S S+      C   N+E  +V  C+YSP P S V+D
Sbjct: 2409 HATQSTRQVPFAAYPKDSAIVRKRSLSSKSLREVCFQGNDESGKVKACIYSPCPISRVSD 2468

Query: 500  VFVKVSRCFPDDVRKQLPYSLWSNPFYLLPPSGSSTIYVPQLSSNSAFILAVTSSSVA-E 558
              ++V R  P  V    PY LWS PF L+PPSGS+ + VPQ S   + +L+VT S +   
Sbjct: 2469 TMIRVKRDLPGWVNSSSPYPLWSAPFPLVPPSGSTNVVVPQPSPGESSLLSVTCSILGGA 2528

Query: 559  YAGRTHAITFQPRYVISNACSKEISYKQKGTDIMFYLGVGEHAHLHWTDTARELLVSICY 618
             AGRT AITFQPRY+I N+CS  + YKQKGT+++ +L VG+H+ L WTDT RELLVSI  
Sbjct: 2529 LAGRTQAITFQPRYIICNSCSHNLCYKQKGTNLVSHLAVGQHSQLQWTDTTRELLVSIRL 2588

Query: 619  NESGWQWSGSFLPDHLGDTLLKMRNFVSGTSNMIRVEVQNADISMGDEKVIGSIKGNSGT 678
            NE GWQWSGSFLPDHLGDT LK+ N+V+   NM+RVEVQNA++S GDEK++GS+ G+ GT
Sbjct: 2589 NEPGWQWSGSFLPDHLGDTQLKIWNYVNKAFNMVRVEVQNANMSSGDEKIVGSVHGHVGT 2648

Query: 679  NLILLSDDGTGYMPYRIDNFSKERLRIYQQKCEMFDAVIHSYSSYPYTWDEPCYPCRLIV 738
            N ILLSDD  GYMPYRIDNFS ERLR+YQQKCE FD ++H Y+S PY WDEPCYP RL +
Sbjct: 2649 NFILLSDDDMGYMPYRIDNFSNERLRVYQQKCETFDTIVHPYTSCPYAWDEPCYPHRLTI 2708

Query: 739  EVPGERVLGSYALDDVKEYMPVHLPSTSEKPERTFFLSVHAEGATKVLSVLDSNYHIFND 798
            EVPG+RVLGSYA +  K+ + VHL STSEKPERT  LS+ AEGATKV SV+DS YH   D
Sbjct: 2709 EVPGDRVLGSYAFEITKQPIAVHLRSTSEKPERTLLLSICAEGATKVFSVVDSGYHAIKD 2768

Query: 799  VK---NSSVQHAAEKRVYDHSQVRPAEYKEKISICIQYIGISLINSYPQELLFACIKDIE 855
            +K   +S      +K++   + +R   Y E   + +  IGISL+NS+PQEL++AC  ++ 
Sbjct: 2769 IKETFDSRFHEKGKKKLQTDNIIR---YTETFLLVLPSIGISLVNSHPQELVYACASNVV 2825

Query: 856  INLLQSLDRQRLSMMISFIQIDNQLHSTPYPVLLSFNNGYRSCQVDNTKSRDDVMRTSIE 915
            + L QS+D+Q+LS  IS +QIDN L ++ YPV+LSFN+ +     D     +  +  S  
Sbjct: 2826 LELSQSVDQQKLSFQISSLQIDNPLQNSSYPVILSFNHDHEVIPPDWGMKNNKAILLS-- 2883

Query: 916  KLNQKSFGSSSSNPVMCLEISKWRKKDISFISFEYIKMRIADFHLEIEQGVILSLFEFFT 975
            ++ Q+  G+S  + V+ ++++KWRKKD+S +SFEYI +RI +F LE+E   +LSL EF  
Sbjct: 2884 EIVQQVRGNSC-DAVVYVDLAKWRKKDVSLVSFEYINIRIGEFGLELELQTLLSLLEFVK 2942

Query: 976  NFSSGQQFGIVPSSNHYDGVSLKDSFSFVHTSENFRLSADQRPLRIAPMFTGKSNRIASL 1035
                  Q  ++P S+      + D+ S   +SE      D    R  P+F      I +L
Sbjct: 2943 AVLPNSQARLLPLSDPTLRPLIYDTGSKDISSE------DTPHARNIPVFNKNQRSIVAL 2996

Query: 1036 PSVVPIGAPWQEIYLLARTKKKIYIEMLELAPIQLTLSFSSAPWMLHNRILTSKEFLIHR 1095
            P VVPIGAPWQ I+LLAR ++KIY+E  +LAPIQ TLSF SAPWML N ILTS E LIHR
Sbjct: 2997 PIVVPIGAPWQHIHLLARRRRKIYVETFDLAPIQFTLSFCSAPWMLRNGILTSGESLIHR 3056

Query: 1096 GLMALADVEGAHIYLKDLTIAHHMASWESIQQILIRHYNRQLLHETYKLFGSAGFIGNPL 1155
            GLMALADVEGA I+LK LTIAH + SWES Q+IL+ HY RQ+LHE YK+FGSAG IGNP+
Sbjct: 3057 GLMALADVEGARIHLKQLTIAHQITSWESFQEILVGHYTRQILHEIYKVFGSAGVIGNPM 3116

Query: 1156 GFARSIGHGIRDFLSVPAKSIMQSPTGLIMGMAQGTTSLLSNTLYAISDATSQFSKAARK 1215
            GFAR++  GI+DFLS P++SI +SP G+I GMA GTTSL S+T+YA+SDA +QFSKAA K
Sbjct: 3117 GFARNVAFGIKDFLSAPSRSISKSPAGIIQGMAHGTTSLFSSTIYALSDAATQFSKAAHK 3176

Query: 1216 GIVAFTYDDQAVSRVEKHQATVSSDSKGVINEVLEGLTGLLQSPIRGAERHGLPGVLSG 1274
            GIVAFT++D  V+R+EK Q    S SKGVI EV EGLTGLLQSPIRGAE+HGLPGV+SG
Sbjct: 3177 GIVAFTFNDHDVARMEKQQLGEGSRSKGVIGEVFEGLTGLLQSPIRGAEKHGLPGVISG 3235