Miyakogusa Predicted Gene

Lj0g3v0264849.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0264849.1 tr|G7IJW3|G7IJW3_MEDTR Vacuolar protein
sorting-associated protein OS=Medicago truncatula
GN=MTR_2g0,65.39,0,seg,NULL; GB DEF: VPS13-LIKE PROTEIN,NULL; VACUOLAR
PROTEIN SORTING-ASSOCIATED PROTEIN (VPS13),Vacuo,CUFF.17732.1
         (577 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G24740.1 | Symbols:  | Protein of unknown function (DUF1162) ...   277   1e-74

>AT5G24740.1 | Symbols:  | Protein of unknown function (DUF1162) |
            chr5:8470073-8489703 REVERSE LENGTH=3464
          Length = 3464

 Score =  277 bits (709), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 189/581 (32%), Positives = 307/581 (52%), Gaps = 27/581 (4%)

Query: 3    MSVKGMLPQLEVTFDTDILLNLLEFYDVFTSFSFYNKRVLLSLNGIGNDYTRLLSKVEYV 62
            +S+K  L  LE  +D   +L +  F+     F   ++R+L SLNG+ ++ TRL +K EY+
Sbjct: 569  LSLKATLQPLEAAYDGGFILAVSNFFSGSRYFKLQHERILSSLNGLESE-TRLAAKAEYL 627

Query: 63   SLNHKNLMLDFTIFDISVNFPWRNTASEYSNLVMKSRSLCFKSTSLESLPSKVEEQPFTM 122
              +   +  D  I D++++FP R   SE  NLV+   SL   S+S ++L S++      +
Sbjct: 628  LSSRNKVKWDLDIKDLTLSFPGRLVESESYNLVLVLESLSITSSSTDAL-SQIPRLQSDV 686

Query: 123  KNFLNTTSTSGICL-GIQLEDLYQYFDVKLNDFKITLMKCDQSQMITILEKFSCSTFLAF 181
             + +N+  +S   L   Q++DLY +FD+K+ + ++ LMK    Q + ++EK S     A 
Sbjct: 687  DHVVNSLQSSVEALDAFQVKDLYDHFDIKICNLEMKLMKIHPFQELPLVEKSSLLIKFAS 746

Query: 182  CVIPDESILNQMEVYVLIESLKAHFSPSMYCAFIELITHLDTSLVRGESEILNCDSHHKV 241
            C+IP+ESIL Q+EV   +     HFSPS++   + +I +LD                H  
Sbjct: 747  CIIPEESILKQLEVEATLPMFNVHFSPSIFKGVMSVIEYLDI-------------QDHGT 793

Query: 242  VSDVTKDSP-FGLSIISKLGSVDLEVDLENSGDNSSELVVSLHDMDLRYSSAEFQEVFVS 300
             +     +P F  +I + L  + L V+LEN G+NS+ LV+S+  +DL YS A F+E  V 
Sbjct: 794  RNPPPSPAPIFHFTIKTDLAFLRLHVNLENKGENSTVLVLSIQQLDLWYSRAIFEEWSVR 853

Query: 301  IKSLMICAHKIKEEKDCHFXXXXXXXXXXXXXXXXXXLPGPSIEFDQYSDGAMLADGCFE 360
             K+L I A   K+  D H                   +   + +     D     +    
Sbjct: 854  AKTLEITACSSKDAADSHI--LCSSGNLLKSSSHGHGMDAHTSDETNIIDYRTTPEAAIS 911

Query: 361  MHYESPRSD-IVCHKFFIYLNNADIHCYPHISGLLIGFFHRISAY--NTMFEKSSESKTA 417
            ++ +  +S   + HK+ +Y  +A++HCYP+I GLL  F  +I++Y  ++ +   S   T 
Sbjct: 912  LNCKVSQSKSFIFHKYTVYWRSAELHCYPYIFGLLTNFLDKIASYKISSSYTNPSSLATD 971

Query: 418  DISESFL-SFGLQKFGFSNYFDFGSSDSACIPFDRFPFVTIYNHGSLGSLESSLVYAIPD 476
             I+ + +  F  ++FGFSN+ +  S    CIP D+FPFVTI N GSL SLESSL Y+  D
Sbjct: 972  TIAPTEIPQFDFERFGFSNFTE--SRSCGCIPLDKFPFVTINNSGSLHSLESSLCYSTSD 1029

Query: 477  WRKYFTLRERKIRSS-KFNMRSGSKIFQSSPSKCKSGFECESGIERTSNVFSIELHLYGI 535
            WRK F L+ RK  +    N    S  FQ       +G      + +T N F++++H++  
Sbjct: 1030 WRKLFILKNRKDGAQIGLNCECNSCTFQLKRDCPLNGLASSRDLGQT-NHFTVDMHVFNT 1088

Query: 536  RVHFHDSSCIIGTIMVPTSKTSLLLCEDNIDILSSSEGLVL 576
             VHFHDSS + GTI++P S+  L + +D +D+++S+E L+L
Sbjct: 1089 NVHFHDSSSVFGTIILPVSRYFLNISDDLLDLVASAEDLML 1129