Miyakogusa Predicted Gene

Lj0g3v0264299.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0264299.1 tr|G7KDM7|G7KDM7_MEDTR GTP-binding protein ERG
OS=Medicago truncatula GN=MTR_5g020440 PE=3
SV=1,64.52,0,coiled-coil,NULL; P-loop containing nucleoside
triphosphate hydrolases,NULL; Prokaryotic type KH dom,CUFF.17430.1
         (385 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G30960.1 | Symbols:  | GTP-binding family protein | chr1:1103...   363   e-100
AT5G66470.1 | Symbols:  | RNA binding;GTP binding | chr5:2654198...    69   6e-12

>AT1G30960.1 | Symbols:  | GTP-binding family protein |
           chr1:11037755-11039977 REVERSE LENGTH=437
          Length = 437

 Score =  363 bits (931), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 166/229 (72%), Positives = 197/229 (86%)

Query: 157 KSLSVGIIGAPNAGKSALTNFMVGTKVAAVSRKTNTTTHEVVGVMTKEDTQICFFDTPGL 216
           KSL+VGIIG PNAGKS+LTNFMVGTKVAA SRKTNTTTHEV+GV+TK DTQ+CFFDTPGL
Sbjct: 152 KSLNVGIIGPPNAGKSSLTNFMVGTKVAAASRKTNTTTHEVLGVLTKGDTQVCFFDTPGL 211

Query: 217 MLNCGGFPYRDVKARVESAWSSVNLYEVLIVIFDVHRHLTRPDSRVIKLVKRMGERSIPN 276
           ML   G+ Y+D+KARV++AW+SV+L++VLIV+FDVHRHL  PDSRV++L+K MGE   P 
Sbjct: 212 MLKKSGYGYKDIKARVQNAWTSVDLFDVLIVMFDVHRHLMSPDSRVVRLIKYMGEEENPK 271

Query: 277 QKRILCMNXXXXXXXXXXXXRVAEEFKDLPGYERHFMISGLKGSGVKDLTQYLMEQAVGR 336
           QKR+LCMN            +VAEEF+DLP YER+FMISGLKGSGVKDL+QYLM+QAV +
Sbjct: 272 QKRVLCMNKVDLVEKKKDLLKVAEEFQDLPAYERYFMISGLKGSGVKDLSQYLMDQAVKK 331

Query: 337 PWDEDPFTMSEEVMKMIAKEVVRERLLDHVHQEIPYDIEHKLIDWKELR 385
           PW+ED FTMSEEV+K I+ EVVRERLLDHVHQEIPY +EH+L+DWKELR
Sbjct: 332 PWEEDAFTMSEEVLKNISLEVVRERLLDHVHQEIPYGLEHRLVDWKELR 380


>AT5G66470.1 | Symbols:  | RNA binding;GTP binding |
           chr5:26541986-26544302 REVERSE LENGTH=427
          Length = 427

 Score = 68.9 bits (167), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 49/230 (21%), Positives = 104/230 (45%), Gaps = 16/230 (6%)

Query: 157 KSLSVGIIGAPNAGKSALTNFMVGTKVAAVSRKTNTTTHEVVGVMTKEDTQICFFDTPGL 216
           +S  V ++G PN GKS L+N M+G K++ V+ K  TT H ++G+ +  + Q+  +DTPG+
Sbjct: 128 RSGYVAVVGMPNVGKSTLSNQMIGQKISIVTDKPQTTRHRILGICSSPEYQMILYDTPGV 187

Query: 217 ----MLNCGGFPYRDVKARVESAWSSVNLYEVLIVIFDVHRHLTRPDSRVIKLVKRMGER 272
               M        ++V+    +A       + ++++ D  +  T      I+ V + G  
Sbjct: 188 IEKKMHRLDTMMMKNVRDAAINA-------DCVVILVDACKTPTN-----IEEVLKEGLG 235

Query: 273 SIPNQKRILCMNXXXXXXXXXXXXRVAEEFKDLPGYERHFMISGLKGSGVKDLTQYLMEQ 332
            +  +  +L +             +  E ++     +    +S   G G++D+ ++++ +
Sbjct: 236 DLEKKPPMLLVMNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGIEDVKEWILSK 295

Query: 333 AVGRPWDEDPFTMSEEVMKMIAKEVVRERLLDHVHQEIPYDIEHKLIDWK 382
               P       +SE   +    E+VRE++      E+PY  +  ++ +K
Sbjct: 296 LPFGPPYYPKDIVSEHPERFFVSEIVREKIFMQYRNEVPYACQVNVLSYK 345