Miyakogusa Predicted Gene

Lj0g3v0264279.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0264279.1 Non Chatacterized Hit- tr|D8SRZ7|D8SRZ7_SELML
Putative uncharacterized protein (Fragment)
OS=Selagin,34.53,0.000000000005,OS03G0366900 PROTEIN,NULL; REPLICATION
PROTEIN A-RELATED,NULL; seg,NULL; no description,Nucleic
acid,CUFF.17423.1
         (178 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G07130.1 | Symbols: STN1, ATSTN1 | Nucleic acid-binding, OB-f...   134   4e-32

>AT1G07130.1 | Symbols: STN1, ATSTN1 | Nucleic acid-binding,
           OB-fold-like protein | chr1:2187928-2188410 FORWARD
           LENGTH=160
          Length = 160

 Score =  134 bits (336), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 66/160 (41%), Positives = 97/160 (60%), Gaps = 4/160 (2%)

Query: 8   SLQNTHVKLLAFDLLSLTPNPYSSDPSSTFYRRGIPLTRAETVGTVTLRDHKPNRFLRFA 67
           SLQ+TH KL+A D+  LT +P  S+  S     G  ++R E VGT+  RD  P +FL+F 
Sbjct: 4   SLQSTHAKLVARDIQRLTQSPTESNSFSLLG--GACVSRVEIVGTIVSRDLTP-KFLKFG 60

Query: 68  IDDGTGCIPCILWLNQLSSPHLARRRSPQDLRLIADAAESSXXXXXXXXXXXXXXXITAF 127
           +DDGTGC+ C++WLNQL+S + +R   P  + L+A AA                  + ++
Sbjct: 61  VDDGTGCVTCVMWLNQLTSSYFSRW-DPATILLLASAARKQAAQIRIGAVARVRGRVGSY 119

Query: 128 RGSVQMTVSDVVLERDPNAEMVHWIECVNLARNCYNVLPQ 167
           RG +Q+T +  V ERDPNAE++HW+EC+ L ++CY V  Q
Sbjct: 120 RGVMQITANVAVAERDPNAEILHWLECLKLGQSCYRVRIQ 159