Miyakogusa Predicted Gene

Lj0g3v0264179.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0264179.1 tr|B9H866|B9H866_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_761186 PE=4
SV=1,57.84,9e-19,seg,NULL,gene.g20529.t1.1
         (118 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G59030.1 | Symbols: TT12, ATTT12 | MATE efflux family protein...   100   2e-22
AT3G21690.1 | Symbols:  | MATE efflux family protein | chr3:7638...    50   3e-07
AT1G47530.1 | Symbols:  | MATE efflux family protein | chr1:1745...    46   4e-06
AT5G38030.1 | Symbols:  | MATE efflux family protein | chr5:1517...    46   6e-06

>AT3G59030.1 | Symbols: TT12, ATTT12 | MATE efflux family protein |
           chr3:21819124-21821288 FORWARD LENGTH=507
          Length = 507

 Score =  100 bits (248), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 50/80 (62%), Positives = 63/80 (78%), Gaps = 2/80 (2%)

Query: 29  VEEMLGSE--QISIRGWLKLIAWESRVLWYLSGASIIVSVFSFMFTFATLMFTGHLGSLP 86
           +EE L      ++ R WLKL  WES++LW LSGASI+VSV ++M +F T+MFTGHLGSL 
Sbjct: 28  IEEFLRRRGSTVTPRWWLKLAVWESKLLWTLSGASIVVSVLNYMLSFVTVMFTGHLGSLQ 87

Query: 87  LAGASIACIGIQGLAFGIMV 106
           LAGASIA +GIQGLA+GIM+
Sbjct: 88  LAGASIATVGIQGLAYGIML 107


>AT3G21690.1 | Symbols:  | MATE efflux family protein |
           chr3:7638750-7641861 FORWARD LENGTH=506
          Length = 506

 Score = 50.1 bits (118), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 42/57 (73%)

Query: 50  ESRVLWYLSGASIIVSVFSFMFTFATLMFTGHLGSLPLAGASIACIGIQGLAFGIMV 106
           ES++L+ L+  ++IV + +++ + +T +F+GHLG+L LA AS+   GIQ  A+G+M+
Sbjct: 52  ESKLLFNLAAPAVIVYMINYLMSMSTQIFSGHLGNLELAAASLGNTGIQVFAYGLML 108


>AT1G47530.1 | Symbols:  | MATE efflux family protein |
           chr1:17451724-17454110 FORWARD LENGTH=484
          Length = 484

 Score = 46.2 bits (108), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 1/76 (1%)

Query: 31  EMLGSEQISIRGWLKLIAWESRVLWYLSGASIIVSVFSFMFTFATLMFTGHLGSLPLAGA 90
           E+ G++  S + W K    ES+ LW L+G +I  ++  +     T  F+G LG L LA  
Sbjct: 17  ELTGTKSAS-KVWAKEFGEESKRLWELAGPAIFTAISQYSLGALTQTFSGRLGELELAAV 75

Query: 91  SIACIGIQGLAFGIMV 106
           S+    I GLAFG+M+
Sbjct: 76  SVENSVISGLAFGVML 91


>AT5G38030.1 | Symbols:  | MATE efflux family protein |
           chr5:15171486-15175302 REVERSE LENGTH=498
          Length = 498

 Score = 45.8 bits (107), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 41/68 (60%)

Query: 39  SIRGWLKLIAWESRVLWYLSGASIIVSVFSFMFTFATLMFTGHLGSLPLAGASIACIGIQ 98
           ++ G++K    E + LWYL+G +I +S+  +    AT +F GH+ ++ LA  S+    I 
Sbjct: 34  TVGGFVKEFNVEVKKLWYLAGPAIFMSITQYSLGAATQVFAGHISTIALAAVSVENSVIA 93

Query: 99  GLAFGIMV 106
           G +FG+M+
Sbjct: 94  GFSFGVML 101