Miyakogusa Predicted Gene

Lj0g3v0263999.1
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0263999.1 CUFF.17400.1
         (110 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G55140.1 | Symbols:  | ribosomal protein L30 family protein |...    97   2e-21

>AT5G55140.1 | Symbols:  | ribosomal protein L30 family protein |
           chr5:22381370-22381787 FORWARD LENGTH=109
          Length = 109

 Score = 97.4 bits (241), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 48/111 (43%), Positives = 71/111 (63%), Gaps = 5/111 (4%)

Query: 1   MSAFKAYKACAPIAWSPNLYITLVRGIPGTRRLHRRTLEALRLGKCNRTVMRWNTPTVRG 60
           MS F+A+KA  PI WS +LYITLVRG+PGTR+LHRRTLEA+ L +C+RTV+  N  ++RG
Sbjct: 1   MSGFRAFKAQVPIEWSQSLYITLVRGLPGTRKLHRRTLEAMGLRRCHRTVLHSNNSSIRG 60

Query: 61  MLQQVLTEALHKSIICWKQLISLCPQTEGRSPP-SPPLVINHQPAAAAGAS 110
           M+ QV        ++  +++ +   + E       PPLV++H   A   ++
Sbjct: 61  MIDQVKRMV----VVETEEMYNARKEAEANHKALRPPLVVSHSSPATDSSN 107