Miyakogusa Predicted Gene

Lj0g3v0263869.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0263869.1 Non Chatacterized Hit- tr|K4B8C7|K4B8C7_SOLLC
Uncharacterized protein OS=Solanum lycopersicum
GN=Sol,32.56,0.0000000005,Bromodomain,Bromodomain; seg,NULL; bromo
domain,Bromodomain; no description,Bromodomain,CUFF.17390.1
         (308 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G46550.1 | Symbols:  | DNA-binding bromodomain-containing pro...    60   1e-09
AT5G14270.1 | Symbols: ATBET9, BET9 | bromodomain and extratermi...    58   9e-09
AT5G14270.2 | Symbols: BET9 | bromodomain and extraterminal doma...    58   1e-08
AT3G27260.1 | Symbols: GTE8 | global transcription factor group ...    52   8e-07
AT3G27260.2 | Symbols: GTE8 | global transcription factor group ...    51   8e-07
AT3G01770.1 | Symbols: ATBET10, BET10 | bromodomain and extrater...    50   2e-06
AT5G63320.3 | Symbols: NPX1 | nuclear protein X1 | chr5:25377180...    49   5e-06
AT5G63320.2 | Symbols: NPX1 | nuclear protein X1 | chr5:25377180...    49   5e-06
AT1G73150.1 | Symbols: GTE3 | global transcription factor group ...    49   5e-06
AT1G06230.3 | Symbols: GTE4 | global transcription factor group ...    49   6e-06
AT1G06230.2 | Symbols: GTE4 | global transcription factor group ...    49   6e-06
AT1G06230.1 | Symbols: GTE4 | global transcription factor group ...    49   6e-06
AT5G63320.1 | Symbols: NPX1 | nuclear protein X1 | chr5:25374413...    48   7e-06

>AT5G46550.1 | Symbols:  | DNA-binding bromodomain-containing
           protein | chr5:18884439-18886503 REVERSE LENGTH=494
          Length = 494

 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 36/104 (34%), Positives = 54/104 (51%), Gaps = 3/104 (2%)

Query: 192 QLWVILKRMMIGRDGWAFKHPLDPFDXXXXXXXXXXXXXPILGFVDIESKLKNWLYSEPE 251
           Q   +L+ +M  R GW FK P+DP                 LG V  +SKL   +YS  +
Sbjct: 72  QCLALLRFLMEHRGGWLFKEPVDPVKMEIPDYFNVIQKPMDLGTV--KSKLLKNVYSNAD 129

Query: 252 QFVDDMRNVFSHALMY-PSRSEVHIIGRRLSDNFEHNWTTLKKK 294
           +F  D+R  F++A+ Y P  +EVH I + +++ FE  W +L KK
Sbjct: 130 EFAADVRLTFANAMHYNPLWNEVHTIAKEINEIFEVRWESLMKK 173


>AT5G14270.1 | Symbols: ATBET9, BET9 | bromodomain and extraterminal
           domain protein 9 | chr5:4605173-4608517 FORWARD
           LENGTH=688
          Length = 688

 Score = 57.8 bits (138), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 52/168 (30%), Positives = 77/168 (45%), Gaps = 12/168 (7%)

Query: 136 FELFKDSTCMSVSSSVDTTARSNG-----TRPKWIKTEQPANDSRTGSEESKKKMELYKK 190
           FEL +     S S+S  T  +S G     T P   KT  P + +   +  +   M L K 
Sbjct: 83  FELSRTVALTSSSASGLTRVKSFGMSRCSTGPG--KTVNPISAASKPTPVTTAVMLLMK- 139

Query: 191 MQLWVILKRMMIGRDGWAFKHPLDPFDXXXXXXXXXXXXXPILGFVDIESKLKNWLYSEP 250
            Q   +LKR+M  + GW F  P+D                  LG V  ++KL +  YS P
Sbjct: 140 -QCEALLKRLMSHQYGWVFNTPVDVVKLNILDYFNVIEHPMDLGTV--KNKLTSGTYSCP 196

Query: 251 EQFVDDMRNVFSHALMY-PSRSEVHIIGRRLSDNFEHNWTTLKKKWAS 297
            +F  D+R  FS+A+ Y P  ++V+++   L   FE  W TL+KK + 
Sbjct: 197 SEFAADVRLTFSNAMTYNPPGNDVYVMADTLRKFFEVRWKTLEKKLSG 244


>AT5G14270.2 | Symbols: BET9 | bromodomain and extraterminal domain
           protein 9 | chr5:4605173-4608517 FORWARD LENGTH=689
          Length = 689

 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 52/168 (30%), Positives = 77/168 (45%), Gaps = 12/168 (7%)

Query: 136 FELFKDSTCMSVSSSVDTTARSNG-----TRPKWIKTEQPANDSRTGSEESKKKMELYKK 190
           FEL +     S S+S  T  +S G     T P   KT  P + +   +  +   M L K 
Sbjct: 83  FELSRTVALTSSSASGLTRVKSFGMSRCSTGPG--KTVNPISAASKPTPVTTAVMLLMK- 139

Query: 191 MQLWVILKRMMIGRDGWAFKHPLDPFDXXXXXXXXXXXXXPILGFVDIESKLKNWLYSEP 250
            Q   +LKR+M  + GW F  P+D                  LG V  ++KL +  YS P
Sbjct: 140 -QCEALLKRLMSHQYGWVFNTPVDVVKLNILDYFNVIEHPMDLGTV--KNKLTSGTYSCP 196

Query: 251 EQFVDDMRNVFSHALMY-PSRSEVHIIGRRLSDNFEHNWTTLKKKWAS 297
            +F  D+R  FS+A+ Y P  ++V+++   L   FE  W TL+KK + 
Sbjct: 197 SEFAADVRLTFSNAMTYNPPGNDVYVMADTLRKFFEVRWKTLEKKLSG 244


>AT3G27260.1 | Symbols: GTE8 | global transcription factor group E8
           | chr3:10068411-10072403 FORWARD LENGTH=813
          Length = 813

 Score = 51.6 bits (122), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 41/139 (29%), Positives = 62/139 (44%), Gaps = 5/139 (3%)

Query: 158 NGTRPKWIKTEQPANDSRTGSEESKKKMELYKKMQLWVILKRMMIGRDGWAFKHPLDPFD 217
           NGT   W +      +S   +  S   + L K  Q   +L+++      W F+ P+D   
Sbjct: 147 NGTSRGWNRGTSGKFESSKETMTSTPNITLMK--QCDTLLRKLWSHPHSWVFQAPVDVVK 204

Query: 218 XXXXXXXXXXXXXPILGFVDIESKLKNWLYSEPEQFVDDMRNVFSHALMY-PSRSEVHII 276
                          LG V  +  L + +YS P +F  D+R  F++A+ Y P   +VHI+
Sbjct: 205 LNIPDYLTTIKHPMDLGTV--KKNLASGVYSSPHEFAADVRLTFTNAMTYNPPGHDVHIM 262

Query: 277 GRRLSDNFEHNWTTLKKKW 295
           G  LS  FE  W T+KKK 
Sbjct: 263 GDILSKLFEARWKTIKKKL 281


>AT3G27260.2 | Symbols: GTE8 | global transcription factor group E8
           | chr3:10068558-10072403 FORWARD LENGTH=764
          Length = 764

 Score = 51.2 bits (121), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 41/139 (29%), Positives = 62/139 (44%), Gaps = 5/139 (3%)

Query: 158 NGTRPKWIKTEQPANDSRTGSEESKKKMELYKKMQLWVILKRMMIGRDGWAFKHPLDPFD 217
           NGT   W +      +S   +  S   + L K  Q   +L+++      W F+ P+D   
Sbjct: 98  NGTSRGWNRGTSGKFESSKETMTSTPNITLMK--QCDTLLRKLWSHPHSWVFQAPVDVVK 155

Query: 218 XXXXXXXXXXXXXPILGFVDIESKLKNWLYSEPEQFVDDMRNVFSHALMY-PSRSEVHII 276
                          LG V  +  L + +YS P +F  D+R  F++A+ Y P   +VHI+
Sbjct: 156 LNIPDYLTTIKHPMDLGTV--KKNLASGVYSSPHEFAADVRLTFTNAMTYNPPGHDVHIM 213

Query: 277 GRRLSDNFEHNWTTLKKKW 295
           G  LS  FE  W T+KKK 
Sbjct: 214 GDILSKLFEARWKTIKKKL 232


>AT3G01770.1 | Symbols: ATBET10, BET10 | bromodomain and
           extraterminal domain protein 10 | chr3:275582-278386
           REVERSE LENGTH=620
          Length = 620

 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 69/164 (42%), Gaps = 22/164 (13%)

Query: 145 MSVSSSVDTTARSNGTRPKWIKTEQPANDSRTGSEESKKKME-------------LYKKM 191
           + +S  V +T  SN +RPK          SR  +   K+ +              + +  
Sbjct: 78  LPISKIVTSTPASNVSRPKSFGM------SRCSTGPGKRVLPFTATKPEPVTTSTMLRMK 131

Query: 192 QLWVILKRMMIGRDGWAFKHPLDPFDXXXXXXXXXXXXXPILGFVDIESKLKNWLYSEPE 251
           Q   +LKR+M  +  W F  P+D                  LG V  +SKL +  YS P 
Sbjct: 132 QCESLLKRLMSQQHCWLFNTPVDVVKLNIPDYFTIIKHPMDLGTV--KSKLTSGTYSSPS 189

Query: 252 QFVDDMRNVFSHALMY-PSRSEVHIIGRRLSDNFEHNWTTLKKK 294
           +F  D+R  F +A+ Y PS + V+     LS  FE  W T++KK
Sbjct: 190 EFSADVRLTFRNAMTYNPSDNNVYRFADTLSKFFEVRWKTIEKK 233


>AT5G63320.3 | Symbols: NPX1 | nuclear protein X1 |
           chr5:25377180-25378783 REVERSE LENGTH=477
          Length = 477

 Score = 48.5 bits (114), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 49/104 (47%), Gaps = 3/104 (2%)

Query: 192 QLWVILKRMMIGRDGWAFKHPLDPFDXXXXXXXXXXXXXPILGFVDIESKLKNWLYSEPE 251
           +   +L R+   + GW F+ P+DP                 LG   I S+L    YS P 
Sbjct: 164 ECETLLNRLWSHKSGWPFRTPVDPVMLNIPDYFNVIKHPMDLG--TIRSRLCKGEYSSPL 221

Query: 252 QFVDDMRNVFSHALMY-PSRSEVHIIGRRLSDNFEHNWTTLKKK 294
            F  D+R  FS+++ Y P  ++ H + + +S  FE  W +++KK
Sbjct: 222 DFAADVRLTFSNSIAYNPPGNQFHTMAQGISKYFESGWKSIEKK 265


>AT5G63320.2 | Symbols: NPX1 | nuclear protein X1 |
           chr5:25377180-25378783 REVERSE LENGTH=477
          Length = 477

 Score = 48.5 bits (114), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 49/104 (47%), Gaps = 3/104 (2%)

Query: 192 QLWVILKRMMIGRDGWAFKHPLDPFDXXXXXXXXXXXXXPILGFVDIESKLKNWLYSEPE 251
           +   +L R+   + GW F+ P+DP                 LG   I S+L    YS P 
Sbjct: 164 ECETLLNRLWSHKSGWPFRTPVDPVMLNIPDYFNVIKHPMDLG--TIRSRLCKGEYSSPL 221

Query: 252 QFVDDMRNVFSHALMY-PSRSEVHIIGRRLSDNFEHNWTTLKKK 294
            F  D+R  FS+++ Y P  ++ H + + +S  FE  W +++KK
Sbjct: 222 DFAADVRLTFSNSIAYNPPGNQFHTMAQGISKYFESGWKSIEKK 265


>AT1G73150.1 | Symbols: GTE3 | global transcription factor group E3
           | chr1:27504327-27505996 REVERSE LENGTH=461
          Length = 461

 Score = 48.5 bits (114), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 30/109 (27%), Positives = 53/109 (48%), Gaps = 3/109 (2%)

Query: 196 ILKRMMIGRDGWAFKHPLDPFDXXXXXXXXXXXXXPILGFVDIESKLKNWLYSEPEQFVD 255
           +L ++M  + GW F  P+D                  LG V  +++L   LY  P +F +
Sbjct: 126 LLTKLMKHKSGWIFNTPVDVVTLGLHDYHNIIKEPMDLGTV--KTRLSKSLYKSPLEFAE 183

Query: 256 DMRNVFSHALMY-PSRSEVHIIGRRLSDNFEHNWTTLKKKWASEDRKQK 303
           D+R  F++A++Y P   +V+ +   L + FE  W  L+ ++    RKQ+
Sbjct: 184 DVRLTFNNAMLYNPVGHDVYHMAEILLNLFEEKWVPLETQYELLIRKQQ 232


>AT1G06230.3 | Symbols: GTE4 | global transcription factor group E4
           | chr1:1907626-1910183 FORWARD LENGTH=766
          Length = 766

 Score = 48.5 bits (114), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 31/107 (28%), Positives = 48/107 (44%), Gaps = 3/107 (2%)

Query: 195 VILKRMMIGRDGWAFKHPLDPFDXXXXXXXXXXXXXPILGFVDIESKLKNWLYSEPEQFV 254
            +L+R+M  + GW F  P+D                  LG   I+S L   LY  P +F 
Sbjct: 427 ALLERLMKHKHGWVFNAPVDVKGLGLLDYYTIIEHPMDLGT--IKSALMKNLYKSPREFA 484

Query: 255 DDMRNVFSHALMY-PSRSEVHIIGRRLSDNFEHNWTTLKKKWASEDR 300
           +D+R  F +A+ Y P   +VH++   L   FE  W  ++  +  E R
Sbjct: 485 EDVRLTFHNAMTYNPEGQDVHLMAVTLLQIFEERWAVIEADYNREMR 531


>AT1G06230.2 | Symbols: GTE4 | global transcription factor group E4
           | chr1:1907626-1910183 FORWARD LENGTH=766
          Length = 766

 Score = 48.5 bits (114), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 31/107 (28%), Positives = 48/107 (44%), Gaps = 3/107 (2%)

Query: 195 VILKRMMIGRDGWAFKHPLDPFDXXXXXXXXXXXXXPILGFVDIESKLKNWLYSEPEQFV 254
            +L+R+M  + GW F  P+D                  LG   I+S L   LY  P +F 
Sbjct: 427 ALLERLMKHKHGWVFNAPVDVKGLGLLDYYTIIEHPMDLGT--IKSALMKNLYKSPREFA 484

Query: 255 DDMRNVFSHALMY-PSRSEVHIIGRRLSDNFEHNWTTLKKKWASEDR 300
           +D+R  F +A+ Y P   +VH++   L   FE  W  ++  +  E R
Sbjct: 485 EDVRLTFHNAMTYNPEGQDVHLMAVTLLQIFEERWAVIEADYNREMR 531


>AT1G06230.1 | Symbols: GTE4 | global transcription factor group E4
           | chr1:1907626-1910183 FORWARD LENGTH=766
          Length = 766

 Score = 48.5 bits (114), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 31/107 (28%), Positives = 48/107 (44%), Gaps = 3/107 (2%)

Query: 195 VILKRMMIGRDGWAFKHPLDPFDXXXXXXXXXXXXXPILGFVDIESKLKNWLYSEPEQFV 254
            +L+R+M  + GW F  P+D                  LG   I+S L   LY  P +F 
Sbjct: 427 ALLERLMKHKHGWVFNAPVDVKGLGLLDYYTIIEHPMDLGT--IKSALMKNLYKSPREFA 484

Query: 255 DDMRNVFSHALMY-PSRSEVHIIGRRLSDNFEHNWTTLKKKWASEDR 300
           +D+R  F +A+ Y P   +VH++   L   FE  W  ++  +  E R
Sbjct: 485 EDVRLTFHNAMTYNPEGQDVHLMAVTLLQIFEERWAVIEADYNREMR 531


>AT5G63320.1 | Symbols: NPX1 | nuclear protein X1 |
           chr5:25374413-25378783 REVERSE LENGTH=1061
          Length = 1061

 Score = 48.1 bits (113), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 49/104 (47%), Gaps = 3/104 (2%)

Query: 192 QLWVILKRMMIGRDGWAFKHPLDPFDXXXXXXXXXXXXXPILGFVDIESKLKNWLYSEPE 251
           +   +L R+   + GW F+ P+DP                 LG   I S+L    YS P 
Sbjct: 164 ECETLLNRLWSHKSGWPFRTPVDPVMLNIPDYFNVIKHPMDLGT--IRSRLCKGEYSSPL 221

Query: 252 QFVDDMRNVFSHALMY-PSRSEVHIIGRRLSDNFEHNWTTLKKK 294
            F  D+R  FS+++ Y P  ++ H + + +S  FE  W +++KK
Sbjct: 222 DFAADVRLTFSNSIAYNPPGNQFHTMAQGISKYFESGWKSIEKK 265