Miyakogusa Predicted Gene

Lj0g3v0263769.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0263769.1 Non Chatacterized Hit- tr|I1PH32|I1PH32_ORYGL
Uncharacterized protein OS=Oryza glaberrima PE=4
SV=1,42.48,2e-19,SUBFAMILY NOT NAMED,NULL; FAMILY NOT
NAMED,NULL,NODE_18621_length_317_cov_302.246063.path1.1
         (113 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G47070.1 | Symbols: SPL1 | squamosa promoter binding protein-...   135   7e-33
AT3G60030.1 | Symbols: SPL12 | squamosa promoter-binding protein...   128   9e-31

>AT2G47070.1 | Symbols: SPL1 | squamosa promoter binding
           protein-like 1 | chr2:19337144-19340552 FORWARD
           LENGTH=881
          Length = 881

 Score =  135 bits (339), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 59/117 (50%), Positives = 89/117 (76%), Gaps = 4/117 (3%)

Query: 1   MAFIFNGQVVIDTSLPFRSNNYSKILTVSPIAAPASKRVQFSVKGVNMIRPATRLMCALE 60
           +AF++NGQVV+DTSL  +S +YS I++V P+A  A+++ QF+VKG+N+ +  TRL+C++E
Sbjct: 453 LAFVYNGQVVVDTSLSLKSRDYSHIISVKPLAIAATEKAQFTVKGMNLRQRGTRLLCSVE 512

Query: 61  GKYLVCEDAHESM----DQYSEELDGLHCIQFSCAVPVTNGRGFIEIEDQGLSSSFF 113
           GKYL+ E  H+S     D + +  + + C+ FSC +P+ +GRGF+EIEDQGLSSSFF
Sbjct: 513 GKYLIQETTHDSTTREDDDFKDNSEIVECVNFSCDMPILSGRGFMEIEDQGLSSSFF 569


>AT3G60030.1 | Symbols: SPL12 | squamosa promoter-binding
           protein-like 12 | chr3:22165856-22169410 REVERSE
           LENGTH=927
          Length = 927

 Score =  128 bits (321), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 62/116 (53%), Positives = 87/116 (75%), Gaps = 5/116 (4%)

Query: 1   MAFIFNGQVVIDTSLPFRSNNYSKILTVSPIAAPASKRVQFSVKGVNMIRPATRLMCALE 60
           +AF FNGQVV+DTSLP RS++YS+I+TV P+A   +K+ QF+VKG+N+ RP TRL+C +E
Sbjct: 494 LAFAFNGQVVLDTSLPLRSHDYSQIITVRPLA--VTKKAQFTVKGINLRRPGTRLLCTVE 551

Query: 61  GKYLVCEDAHESMDQYSE--ELDGLHCIQFSCAVPVTNGRGFIEIEDQ-GLSSSFF 113
           G +LV E     M++  +  E + +  + FSC +P+ +GRGF+EIEDQ GLSSSFF
Sbjct: 552 GTHLVQEATQGGMEERDDLKENNEIDFVNFSCEMPIASGRGFMEIEDQGGLSSSFF 607