Miyakogusa Predicted Gene

Lj0g3v0262909.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0262909.1 tr|B9NCL2|B9NCL2_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_586270 PE=4
SV=1,68.18,0.00000001,seg,NULL; Tic22,Tic22-like,CUFF.17318.1
         (344 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G62650.1 | Symbols:  | Tic22-like family protein | chr5:25152...   460   e-130

>AT5G62650.1 | Symbols:  | Tic22-like family protein |
           chr5:25152873-25155872 REVERSE LENGTH=529
          Length = 529

 Score =  460 bits (1184), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 225/346 (65%), Positives = 268/346 (77%), Gaps = 15/346 (4%)

Query: 1   MALPSEPHRRRRSNNPISSFLETTASNFASLFNPQIPSSPLTLTKSQPHPPSSISLPLFF 60
           M  P + HRR  +   + S + + +S+   LF P+               PS + LPL F
Sbjct: 1   MGSPDKQHRRHVAAEFLHSAVTSISSSIIPLFPPKTA-------------PSRVCLPLRF 47

Query: 61  A--PPLSTPTVDXXXXXXXXXXXXXXXXVRVTRLSTNGKGGGPAFVGQVFSMCDLSGTGL 118
           +    +S+P                   VR++ LS++GK GGPAFVGQVFSMCDL+GTGL
Sbjct: 48  SVSDDVSSPFESTVKSTSSASSSGLNSTVRISSLSSDGKRGGPAFVGQVFSMCDLTGTGL 107

Query: 119 MAVSTHFDIPFISKRTPEWLKKVFAAITKSERNGPVFRFFIDLGDAVSYVKKLNIPSGVV 178
           MAVSTHFDIPFISKRTPEWLKK+F+ ITKSERNGPVFRFF+DLGDAVSYVKKLNIPSGVV
Sbjct: 108 MAVSTHFDIPFISKRTPEWLKKMFSTITKSERNGPVFRFFMDLGDAVSYVKKLNIPSGVV 167

Query: 179 GACRLDLAYEHFKEKPHLFQFVPNEKQVKEANKILKTNPHNGVRRKVDGVPVFSAQNLDI 238
           GACRLDLAYEHFKEKPHLFQFVPNE+QVK ANK+LK+ P NG  +KV+GVPVF AQNLDI
Sbjct: 168 GACRLDLAYEHFKEKPHLFQFVPNERQVKAANKLLKSMPQNGKTQKVEGVPVFGAQNLDI 227

Query: 239 AIATTDGVKWYTPYFFDKKMLDNILEEAVDQHFHTLIQTRNMHRRRDVVDDNLAAEVIEE 298
           A+AT DG+KWYTPYFFDK +LDNILEE+VDQHFHTLIQTR++ RRRDVVDD+LA+EV+EE
Sbjct: 228 AVATADGIKWYTPYFFDKAVLDNILEESVDQHFHTLIQTRHVQRRRDVVDDSLASEVMEE 287

Query: 299 MGDSLGDPPEVQELLDEMGHPSIPLSVISKAAELQFHYTVDKVLLG 344
           MGDS+ +PPEVQE ++E+G   IPLSV++KAAE+Q  Y VD+VLLG
Sbjct: 288 MGDSMLEPPEVQEAMEEIGTSGIPLSVVAKAAEIQLLYAVDRVLLG 333