Miyakogusa Predicted Gene

Lj0g3v0262839.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0262839.1 Non Chatacterized Hit- tr|I3SD63|I3SD63_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=4
SV=1,56.84,3e-17,FBOX,F-box domain, cyclin-like; A Receptor for
Ubiquitination Targets,F-box domain, cyclin-like; F-b,CUFF.17316.1
         (397 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G26850.1 | Symbols:  | F-box family protein | chr2:11449369-1...   410   e-115
AT2G32560.1 | Symbols:  | F-box family protein | chr2:13824820-1...   407   e-114
AT2G41170.1 | Symbols:  | F-box family protein | chr2:17159310-1...   353   1e-97

>AT2G26850.1 | Symbols:  | F-box family protein |
           chr2:11449369-11450889 REVERSE LENGTH=371
          Length = 371

 Score =  410 bits (1055), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 191/314 (60%), Positives = 242/314 (77%), Gaps = 3/314 (0%)

Query: 85  LSVLDLPDLALECILERLPPSALCQMAGVCRSLRESCVSDHLWERHMKQKWGKVIGPAAY 144
           +S+LDLPDL L+CILE LPPS LC MA VC SLRE CVSDHLWE+H+K KWGK++GP+A+
Sbjct: 60  MSILDLPDLPLDCILELLPPSELCTMARVCSSLRERCVSDHLWEKHLKTKWGKILGPSAH 119

Query: 145 REWKWHVASTRNVGGLKHGKQR-GLMRFLSLRWPFPWMKLKGDPNVRSKQGSFSPVDSVM 203
           +EW+ +++S  ++    H     GL + +SL        +  D + R +  S  P+DS M
Sbjct: 120 KEWQCYLSSPYHLDSPHHKTSHLGLAKIISLMRSLS--SIFRDDDHRRRYPSSIPLDSTM 177

Query: 204 SWYLALETGNFWFPGQVYNRENGHVGFMLSCYDAEVSYDSRTDTFQARYPPHGRRTDARE 263
           ++YL+LETG FWFP QVYNRENGHVGFMLSCYDAE+SYD+ T+TFQARYPPHG+R  A E
Sbjct: 178 NFYLSLETGRFWFPAQVYNRENGHVGFMLSCYDAELSYDTDTNTFQARYPPHGKRAIAVE 237

Query: 264 CGIPWERIRAPPVDTSPHDLHISGCLHDLHPGDHIEIQWRRNKEFPYGWWYGVVGHLESC 323
             + WERIRA PVD SPH+L++S  L++L PGDHIEIQWRRNKEFPYGWWY VVGH+ESC
Sbjct: 238 KDVTWERIRAAPVDASPHNLYVSDSLNELKPGDHIEIQWRRNKEFPYGWWYSVVGHMESC 297

Query: 324 NGDENYCRCHSNDTVVLEFNHYTPGSRWRQTTVSRKDHREEGNEADGFYGGIRXXXXXXX 383
           +G+ N+C+CH+++ +VLEFN YT GSRWR+T ++R+DHRE+GNE DGFYGGIR       
Sbjct: 298 DGNLNHCQCHNSEMMVLEFNQYTVGSRWRKTMINRRDHREKGNEEDGFYGGIRKINCKED 357

Query: 384 XXXWKRLWPSEVLD 397
              WKRLWPS +L+
Sbjct: 358 IEMWKRLWPSSILE 371


>AT2G32560.1 | Symbols:  | F-box family protein |
           chr2:13824820-13826761 FORWARD LENGTH=371
          Length = 371

 Score =  407 bits (1045), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 199/321 (61%), Positives = 234/321 (72%), Gaps = 17/321 (5%)

Query: 85  LSVLDLPDLALECILERLPPSALCQMAGVCRSLRESCVSDHLWERHMKQKWGKVIGPAAY 144
           +SVLDLP+LAL+CIL+ LPPS LC MA VC SLRE CVSDHLWE+H+K KWGK++GPAA+
Sbjct: 60  MSVLDLPELALDCILDLLPPSGLCSMARVCSSLRERCVSDHLWEKHLKTKWGKILGPAAH 119

Query: 145 REWKWHVAST--------RNVGGLKHGKQRGLMRFLSLRWPFPWMKLKGDPNVRSKQGSF 196
           REW+ +++S+           G L   K   L+R LS          + D   R    S 
Sbjct: 120 REWQCYISSSTYHLDSPHHQTGNLGFAKIISLIRSLS-------SVFREDKQRRGYASSL 172

Query: 197 SPVDSVMSWYLALETGNFWFPGQVYNRENGHVGFMLSCYDAEVSYDSRTDTFQARYPPHG 256
            P+DS MS YL+LETG FWFP QVYNRENGHVGFMLSCYDAE+SYD+ TDTFQARYPPHG
Sbjct: 173 -PLDSSMSCYLSLETGRFWFPAQVYNRENGHVGFMLSCYDAELSYDTHTDTFQARYPPHG 231

Query: 257 RRTDARECGIPWERIRAPPVDTSPHDLHISGCLHDLHPGDHIEIQWRRNKEFPYGWWYGV 316
           RR  A E G+ W+RIRA P+D SPH LH+S  L +L PGDHIEIQWRRNKEFPYGWWYG+
Sbjct: 232 RRASAIEKGVTWDRIRAAPIDASPHLLHVSDSLKELKPGDHIEIQWRRNKEFPYGWWYGL 291

Query: 317 VGHLESCNGDENYCRCHSNDTVVLEFNHYTPGSRWRQTTVSRKDHREEGNEADGFYGGIR 376
           V HLESC+GD N+C CH ++TVVLEFN YT GSRWR+T + R DH+EEGNE DGFYGGIR
Sbjct: 292 VRHLESCDGDHNHCHCHLSETVVLEFNQYTVGSRWRRTMIMR-DHKEEGNEEDGFYGGIR 350

Query: 377 XXXXXXXXXXWKRLWPSEVLD 397
                     WKR WP  +L+
Sbjct: 351 KLNCKEEIAMWKRHWPCSILE 371


>AT2G41170.1 | Symbols:  | F-box family protein |
           chr2:17159310-17160845 REVERSE LENGTH=371
          Length = 371

 Score =  353 bits (906), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 176/328 (53%), Positives = 223/328 (67%), Gaps = 8/328 (2%)

Query: 75  ENDDQEDSQDLSVLDLPDLALECILERLPPSALCQMAGVCRSLRESCVSDHLWERHMKQK 134
           +  +QED   +S+LDLPDL L+CILE+L PS LC M  VC  LR+ CVSDHLWE+HM+ K
Sbjct: 47  KKKNQEDENKMSLLDLPDLTLDCILEKLSPSELCAMTSVCSELRDKCVSDHLWEKHMETK 106

Query: 135 WGKVIGPAAYREWKWHVAS-----TRNVGGLKHGKQRGLMRFLSLRWPFPWMKLKGDPNV 189
           WG+++G AA +EWK HVA+     T +    +  K     RF++   PF W+        
Sbjct: 107 WGRLMGDAAIQEWKSHVATIMRCLTSSSSSSRKSKPNWSSRFVANLKPFAWLSSNHGCEN 166

Query: 190 RSKQGSFSPVDSVMSWYLALETGNFWFPGQVYNRENGHVGFMLSCYDAEVSYDSRTDTFQ 249
           R      +P+DSVM WY  LE G FWFP QVYNRENGHVGFM+SCYDA++ YD +TDTFQ
Sbjct: 167 RGSSSYLAPIDSVMYWYSNLENGKFWFPAQVYNRENGHVGFMMSCYDAKIRYDFKTDTFQ 226

Query: 250 ARYPPHGRRTDARECGIPWERIRAPPVDTSPHDLHISGCLHDLHPGDHIEIQWRRNKEFP 309
           ARY  HGRR  A E  + W+R+R    DT   DLH+S CLH L PGDH EIQWRR KEFP
Sbjct: 227 ARYSAHGRR--AAEEKVTWQRLRPSQDDTKSRDLHVSDCLHGLRPGDHFEIQWRRTKEFP 284

Query: 310 YGWWYGVVGHLESCNGDENYCRCHSNDTVVLEFNHYTPGSRWRQTTVSRKDHREEGNEAD 369
           YGWW+G+VGHL++C+G +N CRC S++ VV+EF  + P S WR+T + RKDHRE GNE +
Sbjct: 285 YGWWFGIVGHLQNCDGVQN-CRCDSDENVVMEFRQFRPESPWRRTVIKRKDHRETGNEEN 343

Query: 370 GFYGGIRXXXXXXXXXXWKRLWPSEVLD 397
           GFYGG++          WK+LWPS+ L+
Sbjct: 344 GFYGGVKKLGTEEEISTWKQLWPSQALE 371