Miyakogusa Predicted Gene

Lj0g3v0262789.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0262789.1 Non Chatacterized Hit- tr|I1M761|I1M761_SOYBN
Uncharacterized protein (Fragment) OS=Glycine max PE=3,57.61,6e-19,
,CUFF.17305.1
         (95 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G46264.1 | Symbols: AT-HSFB4, HSFB4, SCZ | heat shock transcr...    51   2e-07

>AT1G46264.1 | Symbols: AT-HSFB4, HSFB4, SCZ | heat shock
           transcription factor  B4 | chr1:17224904-17226183
           FORWARD LENGTH=348
          Length = 348

 Score = 50.8 bits (120), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 20/29 (68%), Positives = 25/29 (86%)

Query: 1   MLLSELSQMKNLYNDIIYFIQNHLKPTTP 29
           +L+SEL+ MK LYNDIIYF+QNH+KP  P
Sbjct: 209 VLMSELAHMKKLYNDIIYFVQNHVKPVAP 237