Miyakogusa Predicted Gene

Lj0g3v0262759.1
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0262759.1 tr|D2W164|D2W164_NAEGR Predicted protein
OS=Naegleria gruberi GN=NAEGRDRAFT_75104 PE=4
SV=1,29.25,3e-18,SUBFAMILY NOT NAMED,NULL; FAMILY NOT NAMED,NULL;
UAA,UAA transporter; seg,NULL,CUFF.17302.1
         (392 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G12170.2 | Symbols: CLT3 | CRT (chloroquine-resistance transp...   383   e-107
AT5G19380.1 | Symbols: CLT1 | CRT (chloroquine-resistance transp...   364   e-101
AT5G19380.2 | Symbols: CLT1 | CRT (chloroquine-resistance transp...   305   4e-83
AT4G24460.2 | Symbols: CLT2 | CRT (chloroquine-resistance transp...   272   3e-73
AT4G24460.1 | Symbols: CLT2 | CRT (chloroquine-resistance transp...   272   3e-73

>AT5G12170.2 | Symbols: CLT3 | CRT (chloroquine-resistance
           transporter)-like transporter 3 | chr5:3931649-3934961
           FORWARD LENGTH=452
          Length = 452

 Score =  383 bits (984), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 209/398 (52%), Positives = 251/398 (63%), Gaps = 22/398 (5%)

Query: 1   MTPLCRRLPTAGAASPFVHIRRQHTSPPAAICDIRRFHQTEQPGFAXXXXXXXXXXXXXA 60
           M    RR  T G  +    ++    + P +I  IRR H   +                 +
Sbjct: 1   MATTSRRF-TTGLFASITSVKSHSANRPQSISLIRRNHIDHRLPLIVPSSRRWIIQAARS 59

Query: 61  EATGHGGAWERSVEGEEEENARPRV-------GELEPASGR------GSVNRXXXXXXXX 107
                   W+   +G E E  +P          E+E +S        G   +        
Sbjct: 60  --------WDGFDDGAEAEIKKPGAYGYAIGDNEIEGSSSSTVHVIDGEHVKTAEIVIWA 111

Query: 108 XXXXXMGVGNRVMYKLALVPLKQYPFFLAQLATIGYVIVYFSILYIRYRTGIVTDEMLSV 167
                 GVGNRVMYKLALVPLK+YPFFLAQL+T GYV VY++ILY RYR G VTD MLSV
Sbjct: 112 AVTAAFGVGNRVMYKLALVPLKEYPFFLAQLSTFGYVAVYYTILYFRYRAGTVTDAMLSV 171

Query: 168 PKTPFLFVXXXXXXXXXXXXXXXXXXXXXXIPILSQTFLVWQIFLSIVFLGRRYKVNQLL 227
           PK+PFL V                        +LSQTFLVWQIF SI+FLGRRY VNQ+L
Sbjct: 172 PKSPFLIVGILEALAAAAGMAAAANLSGPSTTVLSQTFLVWQIFFSIIFLGRRYSVNQIL 231

Query: 228 GCFLVTVGVIITVASGSGAGKSLKEAGIFWSLLMIVSFLFQAADTVLKEVIFLDATRKLK 287
           GC LV +GVI++VASGSGA  SL EAG+ W LLM++SFL Q A TVLKEVIF+D+ R+LK
Sbjct: 232 GCTLVALGVIVSVASGSGAAHSLNEAGVLWILLMVLSFLLQGAGTVLKEVIFIDSQRRLK 291

Query: 288 GGSLDLFVVNSFGSAFQALFICLLLPFLSRLWGIPFSQLPNYLKDGAACFLNVGTLSSGC 347
           G SLDLF+VNS+GSAFQA+ I LLLPFLS+LWGIPF+QL  YLKDGA CFLN GT++ GC
Sbjct: 292 GASLDLFIVNSYGSAFQAICIALLLPFLSKLWGIPFNQLGTYLKDGAVCFLNNGTITKGC 351

Query: 348 DGAPLLPLLFIIVNMGFNISLLHLLKISSAVVSCLAST 385
           DGAP LPLLF+I+N+G+NI+LL LLKISSAVVSCLAST
Sbjct: 352 DGAPFLPLLFVIMNIGYNIALLRLLKISSAVVSCLAST 389


>AT5G19380.1 | Symbols: CLT1 | CRT (chloroquine-resistance
           transporter)-like transporter 1 | chr5:6527017-6530445
           REVERSE LENGTH=447
          Length = 447

 Score =  364 bits (934), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 181/318 (56%), Positives = 224/318 (70%), Gaps = 4/318 (1%)

Query: 61  EATGHGGAWERSVEGEEE----ENARPRVGELEPASGRGSVNRXXXXXXXXXXXXXMGVG 116
           EA     +W  S +G+E+    +     +G     +  G  +R             +GVG
Sbjct: 59  EAIPPAKSWNGSNDGDEDIKKSDTRNYAIGGTGGHAVAGKDDRTMEIVIAAATTAALGVG 118

Query: 117 NRVMYKLALVPLKQYPFFLAQLATIGYVIVYFSILYIRYRTGIVTDEMLSVPKTPFLFVX 176
           NRV+YKLAL+PLKQYPFFLAQL+T GYV VYFSILY RYR GIVT EMLSVPK PFL V 
Sbjct: 119 NRVLYKLALIPLKQYPFFLAQLSTFGYVAVYFSILYFRYRAGIVTKEMLSVPKLPFLIVG 178

Query: 177 XXXXXXXXXXXXXXXXXXXXXIPILSQTFLVWQIFLSIVFLGRRYKVNQLLGCFLVTVGV 236
                                  +LSQTFLVWQI  SI+FLGRRY++NQ+LGC LV  GV
Sbjct: 179 VLESLALAAGMAAASNLSGPSTTVLSQTFLVWQILFSIIFLGRRYRINQILGCTLVAFGV 238

Query: 237 IITVASGSGAGKSLKEAGIFWSLLMIVSFLFQAADTVLKEVIFLDATRKLKGGSLDLFVV 296
           I++VASGSGA  S K+ GI WSLLM+ SFL Q ADTV+KEVIFLD+ ++LKG SLDLFVV
Sbjct: 239 IVSVASGSGAAHSFKDTGILWSLLMVFSFLLQGADTVMKEVIFLDSKKRLKGASLDLFVV 298

Query: 297 NSFGSAFQALFICLLLPFLSRLWGIPFSQLPNYLKDGAACFLNVGTLSSGCDGAPLLPLL 356
           NS+GS FQ + I LLLPFLS+LWGIPF+QLP+Y++DG ACFLN+G+  +GC+GAPLLP++
Sbjct: 299 NSYGSIFQVICIALLLPFLSKLWGIPFNQLPSYIRDGGACFLNIGSRITGCEGAPLLPVM 358

Query: 357 FIIVNMGFNISLLHLLKI 374
           F+++NM +NISLL L+KI
Sbjct: 359 FVMMNMAYNISLLRLIKI 376


>AT5G19380.2 | Symbols: CLT1 | CRT (chloroquine-resistance
           transporter)-like transporter 1 | chr5:6527017-6530445
           REVERSE LENGTH=507
          Length = 507

 Score =  305 bits (781), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 147/232 (63%), Positives = 178/232 (76%)

Query: 143 YVIVYFSILYIRYRTGIVTDEMLSVPKTPFLFVXXXXXXXXXXXXXXXXXXXXXXIPILS 202
           YV VYFSILY RYR GIVT EMLSVPK PFL V                        +LS
Sbjct: 205 YVAVYFSILYFRYRAGIVTKEMLSVPKLPFLIVGVLESLALAAGMAAASNLSGPSTTVLS 264

Query: 203 QTFLVWQIFLSIVFLGRRYKVNQLLGCFLVTVGVIITVASGSGAGKSLKEAGIFWSLLMI 262
           QTFLVWQI  SI+FLGRRY++NQ+LGC LV  GVI++VASGSGA  S K+ GI WSLLM+
Sbjct: 265 QTFLVWQILFSIIFLGRRYRINQILGCTLVAFGVIVSVASGSGAAHSFKDTGILWSLLMV 324

Query: 263 VSFLFQAADTVLKEVIFLDATRKLKGGSLDLFVVNSFGSAFQALFICLLLPFLSRLWGIP 322
            SFL Q ADTV+KEVIFLD+ ++LKG SLDLFVVNS+GS FQ + I LLLPFLS+LWGIP
Sbjct: 325 FSFLLQGADTVMKEVIFLDSKKRLKGASLDLFVVNSYGSIFQVICIALLLPFLSKLWGIP 384

Query: 323 FSQLPNYLKDGAACFLNVGTLSSGCDGAPLLPLLFIIVNMGFNISLLHLLKI 374
           F+QLP+Y++DG ACFLN+G+  +GC+GAPLLP++F+++NM +NISLL L+KI
Sbjct: 385 FNQLPSYIRDGGACFLNIGSRITGCEGAPLLPVMFVMMNMAYNISLLRLIKI 436



 Score = 64.7 bits (156), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 34/87 (39%), Positives = 47/87 (54%), Gaps = 4/87 (4%)

Query: 61  EATGHGGAWERSVEGEEE----ENARPRVGELEPASGRGSVNRXXXXXXXXXXXXXMGVG 116
           EA     +W  S +G+E+    +     +G     +  G  +R             +GVG
Sbjct: 59  EAIPPAKSWNGSNDGDEDIKKSDTRNYAIGGTGGHAVAGKDDRTMEIVIAAATTAALGVG 118

Query: 117 NRVMYKLALVPLKQYPFFLAQLATIGY 143
           NRV+YKLAL+PLKQYPFFLAQL+T G+
Sbjct: 119 NRVLYKLALIPLKQYPFFLAQLSTFGF 145


>AT4G24460.2 | Symbols: CLT2 | CRT (chloroquine-resistance
           transporter)-like transporter 2 | chr4:12642888-12645310
           FORWARD LENGTH=431
          Length = 431

 Score =  272 bits (695), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 153/270 (56%), Positives = 195/270 (72%)

Query: 113 MGVGNRVMYKLALVPLKQYPFFLAQLATIGYVIVYFSILYIRYRTGIVTDEMLSVPKTPF 172
           + V NRV+YKLALVP+KQYPFF+AQL T GYV++YF+ILY R R GIVT+EM+ VPK  F
Sbjct: 104 LAVANRVLYKLALVPMKQYPFFMAQLTTFGYVLIYFTILYTRRRLGIVTNEMMDVPKWRF 163

Query: 173 LFVXXXXXXXXXXXXXXXXXXXXXXIPILSQTFLVWQIFLSIVFLGRRYKVNQLLGCFLV 232
             +                      IPIL+QT+LVWQ+  +++ LGRR+ +NQ+ GC LV
Sbjct: 164 AIIGFLEALGVATGMAAAAMLPGPVIPILNQTYLVWQLLFALLILGRRFLLNQIAGCLLV 223

Query: 233 TVGVIITVASGSGAGKSLKEAGIFWSLLMIVSFLFQAADTVLKEVIFLDATRKLKGGSLD 292
            VGV++ V+SGSGA  +L   G  W  +++ S  FQA  +++KE +F DA ++L+G SLD
Sbjct: 224 AVGVVVAVSSGSGADTTLSGIGFLWPAVLVASAAFQAGASIIKEFVFNDAAKRLEGKSLD 283

Query: 293 LFVVNSFGSAFQALFICLLLPFLSRLWGIPFSQLPNYLKDGAACFLNVGTLSSGCDGAPL 352
           +FVVNSFGS FQALF+ LLLPFLS L GIPF+ LP+YLKDGA CF N G   SGCDGAP+
Sbjct: 284 IFVVNSFGSGFQALFVFLLLPFLSNLKGIPFASLPSYLKDGAGCFFNTGAKISGCDGAPI 343

Query: 353 LPLLFIIVNMGFNISLLHLLKISSAVVSCL 382
           LPLL+I  N+ FNISLLHL+KISSA+VS L
Sbjct: 344 LPLLYISTNLAFNISLLHLVKISSAIVSSL 373


>AT4G24460.1 | Symbols: CLT2 | CRT (chloroquine-resistance
           transporter)-like transporter 2 | chr4:12642888-12645310
           FORWARD LENGTH=431
          Length = 431

 Score =  272 bits (695), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 153/270 (56%), Positives = 195/270 (72%)

Query: 113 MGVGNRVMYKLALVPLKQYPFFLAQLATIGYVIVYFSILYIRYRTGIVTDEMLSVPKTPF 172
           + V NRV+YKLALVP+KQYPFF+AQL T GYV++YF+ILY R R GIVT+EM+ VPK  F
Sbjct: 104 LAVANRVLYKLALVPMKQYPFFMAQLTTFGYVLIYFTILYTRRRLGIVTNEMMDVPKWRF 163

Query: 173 LFVXXXXXXXXXXXXXXXXXXXXXXIPILSQTFLVWQIFLSIVFLGRRYKVNQLLGCFLV 232
             +                      IPIL+QT+LVWQ+  +++ LGRR+ +NQ+ GC LV
Sbjct: 164 AIIGFLEALGVATGMAAAAMLPGPVIPILNQTYLVWQLLFALLILGRRFLLNQIAGCLLV 223

Query: 233 TVGVIITVASGSGAGKSLKEAGIFWSLLMIVSFLFQAADTVLKEVIFLDATRKLKGGSLD 292
            VGV++ V+SGSGA  +L   G  W  +++ S  FQA  +++KE +F DA ++L+G SLD
Sbjct: 224 AVGVVVAVSSGSGADTTLSGIGFLWPAVLVASAAFQAGASIIKEFVFNDAAKRLEGKSLD 283

Query: 293 LFVVNSFGSAFQALFICLLLPFLSRLWGIPFSQLPNYLKDGAACFLNVGTLSSGCDGAPL 352
           +FVVNSFGS FQALF+ LLLPFLS L GIPF+ LP+YLKDGA CF N G   SGCDGAP+
Sbjct: 284 IFVVNSFGSGFQALFVFLLLPFLSNLKGIPFASLPSYLKDGAGCFFNTGAKISGCDGAPI 343

Query: 353 LPLLFIIVNMGFNISLLHLLKISSAVVSCL 382
           LPLL+I  N+ FNISLLHL+KISSA+VS L
Sbjct: 344 LPLLYISTNLAFNISLLHLVKISSAIVSSL 373