Miyakogusa Predicted Gene

Lj0g3v0262609.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0262609.1 Non Chatacterized Hit- tr|C0PH02|C0PH02_MAIZE
Uncharacterized protein OS=Zea mays PE=2
SV=1,31.47,3e-18,seg,NULL,CUFF.17290.1
         (368 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G32730.1 | Symbols:  | unknown protein; LOCATED IN: chloropla...   256   2e-68

>AT1G32730.1 | Symbols:  | unknown protein; LOCATED IN: chloroplast;
           EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6
           growth stages; CONTAINS InterPro DOMAIN/s: Protein of
           unknown function DUF702 (InterPro:IPR007818); Has 120
           Blast hits to 118 proteins in 39 species: Archae - 0;
           Bacteria - 8; Metazoa - 63; Fungi - 4; Plants - 33;
           Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).
           | chr1:11841077-11842956 FORWARD LENGTH=327
          Length = 327

 Score =  256 bits (654), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 139/268 (51%), Positives = 182/268 (67%), Gaps = 10/268 (3%)

Query: 34  KSQRGHNKPKCKQCGNVARSRCPYECCKSCCARNQNPCHIHVLKANSTVPEKTPSSGAAP 93
           K+ RG NKPKC QCGNVARSRCP++ CK CC+R +NPC IHVLK  ST  EKT +     
Sbjct: 21  KTLRGLNKPKCIQCGNVARSRCPFQSCKGCCSRAENPCPIHVLKVASTSGEKTQAPSTPS 80

Query: 94  LDQQSLE-LPHSTNAGRAASLRQLSNSFAQFNNLHLSLRSKKPLTRKDAEAINEWRFAKL 152
            +Q++ E  P ST   R +S+RQLS++FAQFNNL+ S R +KPLT KDA+A+NEWRF KL
Sbjct: 81  SEQKATEGTPGSTT--RVSSIRQLSSNFAQFNNLNASSRQRKPLTIKDAQALNEWRFTKL 138

Query: 153 KEYKERNIEVENEAFDRYMQNVDLLEEVLXXXXXXXXXXXXXXXXPASTENN--ETMIPW 210
           KEY++RNIEVENEAFDRYM NV+LLEE                   A+ E N  E ++  
Sbjct: 139 KEYRDRNIEVENEAFDRYMSNVNLLEEAFSFTSVPDEESHGT----AAPEQNKEENIVSE 194

Query: 211 LKLQISSNSMRSNAVRTRVQQIVDEGLMKLQNSAVDGEINEPMDEADEVSKSGKGTERLS 270
           LKL++ SNS R+ + + R+ + V  GL+KL+   + G  ++  D+     K  K  E+ S
Sbjct: 195 LKLRLRSNSARTESFKKRIAETVKAGLVKLKRLDL-GSSSDDQDDIKRRVKRKKWEEKGS 253

Query: 271 ALNDLMDKINKARTEEDLKLCLELKSQL 298
           ALN+++DK+NKARTEEDLK CLE+KS+L
Sbjct: 254 ALNEIIDKLNKARTEEDLKSCLEMKSKL 281