Miyakogusa Predicted Gene

Lj0g3v0262589.1
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0262589.1 Non Chatacterized Hit- tr|I1IM10|I1IM10_BRADI
Uncharacterized protein OS=Brachypodium distachyon
GN=,63.41,2e-19,SUBFAMILY NOT NAMED,NULL;
SEC3/SYNTAXIN-RELATED,NULL,CUFF.17287.1
         (79 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G47550.1 | Symbols: SEC3A | exocyst complex component sec3A |...   128   7e-31
AT1G47550.2 | Symbols: SEC3A | exocyst complex component sec3A |...   128   7e-31
AT1G47560.1 | Symbols: SEC3B | exocyst complex component sec3B |...   125   6e-30

>AT1G47550.1 | Symbols: SEC3A | exocyst complex component sec3A |
          chr1:17457171-17463896 FORWARD LENGTH=887
          Length = 887

 Score =  128 bits (322), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 62/79 (78%), Positives = 69/79 (87%)

Query: 1  MAKSSADDAELRRACEAAIEGTKQKIVLSIRVVKTIGTWGKTSKLGRQMAKPRVLAISTK 60
          MAKSSADD ELRRACEAAIEGTKQ IV+SIRV K+ G WGK+ KLGRQMAKPRVLA+S K
Sbjct: 1  MAKSSADDEELRRACEAAIEGTKQSIVMSIRVAKSRGVWGKSGKLGRQMAKPRVLALSVK 60

Query: 61 AKTQRTKAFLRVLKYSNGG 79
          +K  R KAFLRV+KYS+GG
Sbjct: 61 SKGPRKKAFLRVMKYSSGG 79


>AT1G47550.2 | Symbols: SEC3A | exocyst complex component sec3A |
          chr1:17457171-17463896 FORWARD LENGTH=888
          Length = 888

 Score =  128 bits (322), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 62/79 (78%), Positives = 69/79 (87%)

Query: 1  MAKSSADDAELRRACEAAIEGTKQKIVLSIRVVKTIGTWGKTSKLGRQMAKPRVLAISTK 60
          MAKSSADD ELRRACEAAIEGTKQ IV+SIRV K+ G WGK+ KLGRQMAKPRVLA+S K
Sbjct: 1  MAKSSADDEELRRACEAAIEGTKQSIVMSIRVAKSRGVWGKSGKLGRQMAKPRVLALSVK 60

Query: 61 AKTQRTKAFLRVLKYSNGG 79
          +K  R KAFLRV+KYS+GG
Sbjct: 61 SKGPRKKAFLRVMKYSSGG 79


>AT1G47560.1 | Symbols: SEC3B | exocyst complex component sec3B |
          chr1:17466751-17473190 FORWARD LENGTH=887
          Length = 887

 Score =  125 bits (314), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 61/79 (77%), Positives = 68/79 (86%)

Query: 1  MAKSSADDAELRRACEAAIEGTKQKIVLSIRVVKTIGTWGKTSKLGRQMAKPRVLAISTK 60
          MAKSSADD ELRRACEAAIEGTKQ IV+SIRV K+ G WGK+ KLGRQMAKPRVLA+S K
Sbjct: 1  MAKSSADDEELRRACEAAIEGTKQSIVMSIRVAKSRGVWGKSGKLGRQMAKPRVLALSVK 60

Query: 61 AKTQRTKAFLRVLKYSNGG 79
          +K  R KA LRV+KYS+GG
Sbjct: 61 SKGPRKKAILRVMKYSSGG 79